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js4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00076
Bact-Virjs4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00076
Identity
- Kingdom:
- phage
Quality
75.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-62
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tifA00 | 3.10.20.80 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Translation initiation factor 3 (IF-3), N-terminal domain | 0.63 | 51.0 | 4.75e-01 | 96.4% | 71.1% |
| 1yelA00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.62 | 54.0 | 4.49e-01 | 100.0% | 71.6% |
| 2al3A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.62 | 44.0 | 4.06e-01 | 76.8% | 90.8% |
| 1pm3A00 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.62 | 49.0 | 4.63e-01 | 89.3% | 92.8% |
| 1wh3A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 43.0 | 4.06e-01 | 76.8% | 97.2% |
| 3gqwB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.60 | 42.0 | 2.50e-01 | 75.0% | 34.0% |
| 5ah5A01 | 3.10.20.590 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 45.0 | 4.39e-01 | 82.1% | 100.0% |
| 1a70A00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.60 | 43.0 | 3.67e-01 | 78.6% | 91.8% |
| 1x1mA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 43.0 | 3.54e-01 | 78.6% | 79.4% |
| 1i42A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 42.0 | 3.66e-01 | 78.6% | 84.3% |
| 3f8xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 48.0 | 3.77e-01 | 100.0% | 72.7% |
| 6vtmB00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 43.0 | 3.81e-01 | 92.9% | 68.8% |
| 2c7hA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 39.0 | 3.49e-01 | 76.8% | 82.6% |
| 4bfrB02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 44.0 | 3.53e-01 | 96.4% | 71.9% |
| 1e7uA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 43.0 | 3.21e-01 | 94.6% | 58.1% |
| 1v6eA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 42.0 | 3.83e-01 | 92.9% | 96.2% |
| 6ruiB05 | 3.90.1070.20 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.53 | 37.0 | 3.29e-01 | 78.6% | 67.4% |
| 2kvzA00 | 3.10.20.320 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Putative peptidoglycan bound protein (lpxtg motif) | 0.52 | 38.0 | 3.34e-01 | 78.6% | 72.9% |
| 2dzmA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 37.0 | 3.50e-01 | 82.1% | 98.6% |
| 4q7fA02 | 3.90.780.10 | Alpha Beta › Alpha-Beta Complex › 5'-nucleotidase; domain 2 › 5'-Nucleotidase, C-terminal domain | 0.50 | 36.0 | 2.61e-01 | 83.9% | 95.7% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3451371 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.64 | 55.0 | 4.71e-01 | 100.0% | 89.2% |
| 3668077 | 221.2.1.1 ↗ | a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N | 0.64 | 52.0 | 4.88e-01 | 100.0% | 73.3% |
| 4296285 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.63 | 48.0 | 4.71e-01 | 82.1% | 100.0% |
| 3374213 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.63 | 54.0 | 4.58e-01 | 100.0% | 91.6% |
| 209 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.62 | 54.0 | 4.49e-01 | 100.0% | 71.6% |
| 4031525 | 221.2.1.1 ↗ | a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N | 0.62 | 50.0 | 5.10e-01 | 94.6% | 96.4% |
| 3275203 | 221.2.1.1 ↗ | a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N | 0.62 | 51.0 | 4.56e-01 | 100.0% | 63.5% |
| 2452648 | 221.2.1.1 ↗ | a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N | 0.62 | 50.0 | 4.36e-01 | 100.0% | 57.1% |
| 4108510 | 221.2.1.1 ↗ | a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N | 0.62 | 50.0 | 4.60e-01 | 96.4% | 68.8% |
| 626 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.62 | 49.0 | 4.63e-01 | 89.3% | 92.8% |
| 3824023 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.62 | 51.0 | 4.41e-01 | 100.0% | 90.8% |
| 3830192 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.61 | 52.0 | 4.42e-01 | 100.0% | 89.0% |
| 3836258 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.61 | 52.0 | 4.32e-01 | 100.0% | 85.7% |
| 4398468 | 4.6.1.5 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M | 0.60 | 49.0 | 4.48e-01 | 91.1% | 84.0% |
| 3613981 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.60 | 43.0 | 3.52e-01 | 78.6% | 71.8% |
| 4586640 | 4.6.1.5 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M | 0.59 | 47.0 | 4.46e-01 | 91.1% | 91.4% |
| 3847728 | 221.1.1.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX | 0.59 | 43.0 | 3.61e-01 | 80.4% | 75.0% |
| 4856785 | 221.2.1.1 ↗ | a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N | 0.58 | 46.0 | 4.22e-01 | 96.4% | 66.3% |
| 3502554 | 221.2.1.1 ↗ | a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N | 0.58 | 45.0 | 4.40e-01 | 91.1% | 83.1% |
| 5015075 | 221.12.1.0 ↗ | a+b two layers › beta-Grasp | 0.57 | 46.0 | 4.60e-01 | 98.2% | 91.7% |
| 3788875 | 4.6.1.5 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M | 0.57 | 47.0 | 4.28e-01 | 91.1% | 86.7% |
| 3413398 | 221.1.1.163 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › GRHL1_C | 0.56 | 47.0 | 4.19e-01 | 100.0% | 94.1% |
| 3619830 | 221.1.1.11 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_p85B | 0.55 | 42.0 | 3.47e-01 | 85.7% | 87.3% |
| 3813831 | 226.1.1.16 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › Auxin_inducible | 0.53 | 37.0 | 3.33e-01 | 76.8% | 58.8% |
| 3236160 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.52 | 41.0 | 3.28e-01 | 91.1% | 41.6% |
| 4547229 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.51 | 38.0 | 2.73e-01 | 78.6% | 42.6% |
| 3961613 | 2003.1.3.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_binding_3, NAD_binding_8 | 0.50 | 40.0 | 2.71e-01 | 89.3% | 72.7% |
| 3530774 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.50 | 35.0 | 3.07e-01 | 76.8% | 89.5% |
| 3696240 | 2003.1.3.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_binding_3 | 0.50 | 41.0 | 2.37e-01 | 89.3% | 36.9% |