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js4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00091
Bact-Virjs4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00091
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-71
Domain cluster:
rep: SRR1747022_scaffold_36_prodigal-single.1__X__X__00131__D11-62
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 58.0 | 6.01e-01 | 87.1% | 100.0% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 53.0 | 5.53e-01 | 82.9% | 100.0% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 51.0 | 5.38e-01 | 82.9% | 100.0% |
| 4o5vA03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.66 | 53.0 | 5.23e-01 | 87.1% | 98.7% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 54.0 | 5.51e-01 | 91.4% | 100.0% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 51.0 | 5.43e-01 | 84.3% | 100.0% |
| 1wzoA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.64 | 36.0 | 4.47e-01 | 74.3% | 97.5% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 53.0 | 5.45e-01 | 91.4% | 100.0% |
| 2v1qA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 42.0 | 4.55e-01 | 70.0% | 98.3% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 48.0 | 4.69e-01 | 88.6% | 96.0% |
| 3bdwA00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.58 | 49.0 | 4.22e-01 | 100.0% | 89.4% |
| 1s3iA02 | 3.10.25.10 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain | 0.58 | 40.0 | 3.58e-01 | 72.9% | 97.1% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.56 | 41.0 | 3.34e-01 | 77.1% | 74.8% |
| 2fvgA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.56 | 44.0 | 4.28e-01 | 82.9% | 100.0% |
| 2de6A02 | 2.20.25.680 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.56 | 37.0 | 3.97e-01 | 77.1% | 84.5% |
| 2c6uA00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.55 | 46.0 | 4.01e-01 | 100.0% | 92.6% |
| 5wcmA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 38.0 | 2.61e-01 | 74.3% | 52.5% |
| 1h8uB00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.54 | 44.0 | 3.93e-01 | 98.6% | 100.0% |
| 5yhhA00 | 2.40.33.20 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.53 | 42.0 | 3.05e-01 | 85.7% | 76.4% |
| 4g6iB01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.52 | 45.0 | 4.23e-01 | 98.6% | 100.0% |
| 1o67C00 | 2.40.33.20 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.52 | 43.0 | 3.07e-01 | 91.4% | 71.0% |
| 1yzbA01 | 3.90.70.40 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.52 | 42.0 | 3.62e-01 | 95.7% | 83.9% |
| 4l8jA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.51 | 44.0 | 3.99e-01 | 97.1% | 98.9% |
| 3a35A01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 43.0 | 4.03e-01 | 98.6% | 97.8% |
| 3aiiA03 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.50 | 32.0 | 2.96e-01 | 80.0% | 50.6% |
| 2f9hA00 | 2.40.33.40 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › Phosphotransferase system, glucitol/sorbitol-specific IIA component | 0.50 | 40.0 | 3.38e-01 | 88.6% | 100.0% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5056706 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 53.0 | 6.20e-01 | 78.6% | 100.0% |
| 4946165 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 56.0 | 6.31e-01 | 80.0% | 96.4% |
| 5033075 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 54.0 | 6.07e-01 | 80.0% | 94.5% |
| 4369736 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.75 | 47.0 | 5.68e-01 | 77.1% | 100.0% |
| 5017214 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 54.0 | 6.05e-01 | 78.6% | 96.4% |
| 3603357 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 55.0 | 6.15e-01 | 82.9% | 100.0% |
| 4992872 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 54.0 | 6.01e-01 | 80.0% | 98.2% |
| 142633 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.72 | 58.0 | 6.01e-01 | 87.1% | 100.0% |
| 4010317 | 4.1.1.395 ↗ | beta barrels › SH3 › SH3 › SH3 › PF27398 | 0.71 | 55.0 | 5.74e-01 | 92.9% | 89.2% |
| 4524363 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.71 | 56.0 | 5.86e-01 | 85.7% | 100.0% |
| 3590827 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.71 | 57.0 | 5.91e-01 | 85.7% | 100.0% |
| 3306779 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.71 | 57.0 | 5.96e-01 | 85.7% | 100.0% |
| 4028885 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.71 | 57.0 | 5.91e-01 | 85.7% | 100.0% |
| 4158157 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.71 | 58.0 | 6.05e-01 | 87.1% | 100.0% |
| 4998329 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 48.0 | 5.36e-01 | 80.0% | 90.9% |
| 3265170 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.70 | 57.0 | 5.89e-01 | 85.7% | 100.0% |
| 4037383 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.69 | 57.0 | 5.90e-01 | 87.1% | 100.0% |
| 3608236 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.69 | 55.0 | 5.73e-01 | 85.7% | 100.0% |
| 4201878 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.69 | 56.0 | 5.81e-01 | 87.1% | 100.0% |
| 4284764 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.68 | 54.0 | 5.64e-01 | 85.7% | 100.0% |
| 4519674 | 4.1.1.186 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5397 | 0.68 | 51.0 | 5.61e-01 | 78.6% | 100.0% |
| 4646632 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.68 | 55.0 | 5.72e-01 | 85.7% | 100.0% |
| 4077367 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.68 | 54.0 | 5.57e-01 | 84.3% | 100.0% |
| 4292289 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.68 | 55.0 | 5.76e-01 | 87.1% | 100.0% |
| 5060760 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.68 | 52.0 | 5.40e-01 | 81.4% | 93.8% |
| 2138090 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.67 | 53.0 | 5.51e-01 | 85.7% | 100.0% |
| 4086925 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.67 | 56.0 | 5.77e-01 | 88.6% | 100.0% |
| 4213539 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.67 | 54.0 | 5.59e-01 | 85.7% | 100.0% |
| 4419948 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.67 | 55.0 | 5.70e-01 | 87.1% | 100.0% |
| 4348606 | 4.1.1.440 ↗ | beta barrels › SH3 › SH3 › SH3 › PF27165 | 0.67 | 51.0 | 5.31e-01 | 81.4% | 96.9% |
| 4051625 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.67 | 52.0 | 5.43e-01 | 85.7% | 100.0% |
| 3948467 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.66 | 51.0 | 5.25e-01 | 82.9% | 100.0% |
| 4946993 | 4.1.1.479 ↗ | beta barrels › SH3 › SH3 › SH3 › eIF-5a | 0.66 | 56.0 | 5.68e-01 | 92.9% | 100.0% |
| 4446791 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.66 | 52.0 | 5.38e-01 | 85.7% | 100.0% |
| 4038269 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.66 | 51.0 | 5.31e-01 | 85.7% | 100.0% |
| 3950208 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.66 | 51.0 | 5.31e-01 | 85.7% | 100.0% |
| 3599172 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 52.0 | 5.34e-01 | 85.7% | 100.0% |
| 4146937 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.65 | 54.0 | 5.56e-01 | 88.6% | 100.0% |
| 3240933 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.65 | 47.0 | 2.93e-01 | 75.7% | 23.7% |
| 4931072 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.65 | 55.0 | 5.55e-01 | 92.9% | 100.0% |
| 4073200 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.64 | 49.0 | 5.08e-01 | 84.3% | 100.0% |
| 3393358 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.63 | 54.0 | 4.84e-01 | 92.9% | 80.0% |
| 3643549 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.63 | 51.0 | 4.92e-01 | 88.6% | 83.7% |
| 3483489 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 51.0 | 4.99e-01 | 90.0% | 92.0% |
| 5025895 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 44.0 | 3.81e-01 | 74.3% | 85.7% |
| 3720660 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 48.0 | 4.72e-01 | 88.6% | 96.0% |
| 4863266 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.59 | 47.0 | 4.87e-01 | 91.4% | 100.0% |
| 3213571 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.59 | 42.0 | 2.72e-01 | 77.1% | 24.6% |
| 1685099 | 1.1.7.51 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NeqB_N | 0.59 | 38.0 | 4.13e-01 | 82.9% | 79.7% |
| 591 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.59 | 48.0 | 4.72e-01 | 90.0% | 96.1% |
| 3473924 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.58 | 41.0 | 4.30e-01 | 74.3% | 100.0% |
| 4049734 | 1.16.1.5 ↗ | beta barrels › cradle loop barrel › Baseplate wedge protein gp6 domain I › Baseplate wedge protein gp6 domain I › Baseplate_J | 0.58 | 41.0 | 4.08e-01 | 81.4% | 69.3% |
| 3766287 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 42.0 | 3.76e-01 | 78.6% | 74.0% |
| 4959331 | 1.1.7.27 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF1905 | 0.57 | 40.0 | 3.86e-01 | 74.3% | 87.5% |
| 3389043 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.56 | 46.0 | 3.96e-01 | 100.0% | 88.4% |
| 4963049 | 4.1.1.486 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7098 | 0.55 | 41.0 | 4.00e-01 | 80.0% | 91.3% |
| 3618606 | 304.112.1.10 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Med13_N | 0.55 | 43.0 | 2.88e-01 | 88.6% | 23.4% |
| 2163960 | 1.1.15.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC,YiiM_3-alpha | 0.53 | 42.0 | 3.05e-01 | 85.7% | 76.4% |
| 4001842 | 10.32.1.1 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B | 0.53 | 45.0 | 3.48e-01 | 100.0% | 60.6% |
| 3997291 | 10.32.1.1 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B | 0.53 | 44.0 | 3.52e-01 | 100.0% | 64.2% |
| 91 | 1.1.15.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC,YiiM_3-alpha | 0.52 | 43.0 | 3.04e-01 | 90.0% | 70.6% |
| 4000645 | 10.32.1.1 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B | 0.52 | 43.0 | 3.38e-01 | 100.0% | 57.2% |
| 3759214 | 10.32.1.1 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B | 0.50 | 43.0 | 3.25e-01 | 100.0% | 73.5% |