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js4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00093

Bact-Vir

js4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00093

Identity

Kingdom:
phage

Quality

91.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-74
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.69 52.0 4.17e-01 82.2% 84.9%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.62 46.0 3.25e-01 78.1% 71.3%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 49.0 4.31e-01 89.0% 67.6%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 45.0 3.64e-01 79.5% 84.2%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 44.0 3.35e-01 79.5% 35.1%
4jqtA01 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.60 44.0 3.26e-01 79.5% 67.2%
3zsjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 44.0 3.64e-01 80.8% 89.1%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 44.0 3.59e-01 79.5% 85.1%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 44.0 3.65e-01 79.5% 87.4%
1c1fA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 43.0 3.61e-01 79.5% 89.6%
1uaiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 43.0 3.14e-01 79.5% 57.0%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.59 46.0 4.37e-01 87.7% 92.2%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 43.0 3.54e-01 80.8% 89.6%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 42.0 3.44e-01 79.5% 80.4%
4bpzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 42.0 2.94e-01 79.5% 98.8%
6xofA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 41.0 2.88e-01 78.1% 96.0%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 42.0 3.15e-01 79.5% 74.3%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.74e-01 80.8% 68.8%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.50e-01 84.9% 78.8%
4ccdA03 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 41.0 3.09e-01 79.5% 61.0%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.56 42.0 3.56e-01 83.6% 64.7%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 38.0 3.68e-01 89.0% 61.6%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.84e-01 84.9% 80.6%
2h0bC00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.25e-01 84.9% 78.7%
5gm0A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.71e-01 89.0% 81.5%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.64e-01 89.0% 84.3%
1h30A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 3.06e-01 83.6% 69.7%
4agrB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.51e-01 89.0% 79.9%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.54 41.0 4.10e-01 80.8% 86.7%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.55e-01 89.0% 79.9%
6g62A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 38.0 3.27e-01 74.0% 95.7%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.73e-01 84.9% 73.5%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.53e-01 89.0% 77.9%
3bu2A02 3.30.1940.10 Alpha Beta › 2-Layer Sandwich › Nucleic acid-binding protein fold › YtpR-like 0.54 32.0 3.37e-01 87.7% 62.3%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.35e-01 94.5% 61.1%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.51e-01 89.0% 79.0%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.52 40.0 3.86e-01 82.2% 80.5%
7c8fA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 2.93e-01 91.8% 55.0%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.01e-01 86.3% 59.5%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 42.0 3.25e-01 90.4% 64.8%
1upsB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 2.94e-01 93.2% 49.1%
2uurA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.03e-01 90.4% 54.8%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.51 38.0 3.38e-01 79.5% 73.8%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.07e-01 100.0% 81.6%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.50 39.0 3.49e-01 83.6% 88.3%
8ep4C01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 2.90e-01 93.2% 49.4%
2uwaA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 2.98e-01 100.0% 62.0%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 43.0 2.82e-01 98.6% 30.9%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4073461 2484.1.1.12 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.65 53.0 3.93e-01 90.4% 64.2%
3222053 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.65 54.0 3.84e-01 93.2% 44.0%
3215907 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 52.0 3.54e-01 91.8% 35.9%
3926124 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.62 46.0 3.77e-01 79.5% 85.2%
3219131 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.61 45.0 3.76e-01 79.5% 87.4%
5043894 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 45.0 3.56e-01 82.2% 61.8%
3991468 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.60 44.0 3.77e-01 79.5% 94.4%
3266483 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 4.01e-01 80.8% 66.4%
3348533 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.60 46.0 3.44e-01 83.6% 80.6%
3164898 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.59 40.0 3.76e-01 80.8% 54.7%
3214327 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.59 44.0 3.65e-01 79.5% 83.7%
3442082 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.59 46.0 3.29e-01 83.6% 77.2%
3667884 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.59 46.0 3.26e-01 83.6% 80.9%
4003379 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.59 43.0 3.32e-01 79.5% 69.8%
3391677 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.59 43.0 3.46e-01 79.5% 83.9%
3236787 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.59 47.0 4.00e-01 91.8% 63.8%
4000954 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.58 43.0 3.33e-01 79.5% 74.6%
4579655 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.58 50.0 3.10e-01 95.9% 33.6%
3214083 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 46.0 3.71e-01 90.4% 78.7%
2588563 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.58 45.0 3.65e-01 84.9% 83.1%
3995338 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 46.0 3.67e-01 89.0% 78.7%
3226939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 4.09e-01 84.9% 78.0%
3936845 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 46.0 3.67e-01 89.0% 78.7%
3543416 3794.1.1.1 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.57 44.0 3.60e-01 84.9% 62.8%
3851887 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.56 44.0 3.43e-01 84.9% 72.5%
3991476 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.56 43.0 3.61e-01 84.9% 86.9%
3876094 10.1.1.77 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1, Laminin_G_2 0.56 47.0 2.91e-01 91.8% 29.9%
5011877 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.55 40.0 3.80e-01 78.1% 92.2%
5068365 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.55 45.0 3.42e-01 89.0% 61.7%
3502064 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.55 43.0 3.62e-01 84.9% 87.5%
3822766 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.55 45.0 3.49e-01 89.0% 70.6%
3996427 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.55 42.0 3.51e-01 83.6% 87.4%
3800817 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 45.0 3.58e-01 89.0% 74.5%
3927945 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.72e-01 86.3% 66.1%
3797509 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 42.0 3.44e-01 84.9% 84.1%
3203736 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 40.0 3.19e-01 82.2% 88.2%
3505545 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.54 44.0 3.60e-01 89.0% 80.0%
5030570 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 43.0 3.40e-01 90.4% 71.5%
3991202 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.54 44.0 3.54e-01 89.0% 76.4%
4608534 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.54 43.0 2.89e-01 91.8% 45.5%
3916301 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.54 44.0 3.61e-01 89.0% 81.5%
3921189 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.53 46.0 3.42e-01 94.5% 65.0%
3798404 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 43.0 3.43e-01 87.7% 75.2%
3233353 3794.1.1.3 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.53 45.0 3.77e-01 97.3% 54.1%
2157212 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.53 43.0 3.52e-01 89.0% 79.0%
3520852 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.53 45.0 3.66e-01 98.6% 53.3%
3222893 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.53 43.0 3.32e-01 89.0% 67.9%
4127133 3794.1.1.3 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.53 45.0 3.71e-01 97.3% 52.1%
4026175 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 43.0 3.12e-01 90.4% 51.2%
3607606 3794.1.1.3 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.52 44.0 3.76e-01 97.3% 59.2%
5048388 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.52 41.0 3.53e-01 87.7% 77.5%
3240647 3794.1.1.3 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.52 44.0 3.75e-01 97.3% 58.4%
3596616 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.52 44.0 3.65e-01 97.3% 54.8%
154364 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.52 42.0 3.27e-01 90.4% 66.3%
4945153 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.51 42.0 3.07e-01 90.4% 60.0%
1073 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.51 42.0 2.91e-01 93.2% 48.9%
3901785 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 40.0 2.97e-01 86.3% 65.9%
3352288 10.1.1.12 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16,XET_C 0.51 42.0 2.95e-01 100.0% 59.0%
3415319 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 40.0 2.95e-01 87.7% 60.0%
3175648 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.51 43.0 2.82e-01 94.5% 41.9%
3219188 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.50 40.0 3.06e-01 89.0% 75.3%