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js4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00108
Bact-Virjs4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00108
Identity
- Kingdom:
- phage
Quality
84.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-69
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qyzA01 | 3.30.1490.160 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ctc02137 like domains | 0.59 | 40.0 | 4.35e-01 | 100.0% | 90.6% |
| 2zt5A02 | 3.30.40.230 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.59 | 51.0 | 4.82e-01 | 100.0% | 95.2% |
| 2conA00 | 6.20.210.10 | Special › Other non-globular › Herpes Virus-1 › Nin one binding (NOB1), Zn-ribbon-like | 0.58 | 30.0 | 2.90e-01 | 100.0% | 43.0% |
| 5hkxA04 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 33.0 | 3.84e-01 | 100.0% | 90.9% |
| 2ff4A03 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.53 | 46.0 | 4.12e-01 | 100.0% | 95.9% |
| 1xvhB00 | 1.20.120.1850 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Ebh helix bundles repeating unit (S and A modules) | 0.52 | 41.0 | 3.47e-01 | 86.8% | 79.7% |
| 3uoaB01 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 40.0 | 2.88e-01 | 85.3% | 59.2% |
| 2g5gX01 | 3.40.50.11550 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 40.0 | 3.04e-01 | 92.6% | 43.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3230536 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.69 | 55.0 | 4.67e-01 | 86.8% | 96.4% |
| 3954522 | 3108.1.1.0 ↗ | a+b two layers › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 | 0.60 | 50.0 | 5.00e-01 | 98.5% | 92.9% |
| 4929500 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 40.0 | 4.18e-01 | 79.4% | 96.7% |
| 3226766 | 105.1.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain | 0.54 | 41.0 | 4.24e-01 | 89.7% | 95.0% |
| 5025541 | 7582.1.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 | 0.54 | 46.0 | 3.48e-01 | 98.5% | 50.9% |
| 3622513 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 41.0 | 4.33e-01 | 100.0% | 95.0% |
| 4270013 | 7582.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD | 0.52 | 42.0 | 3.26e-01 | 95.6% | 63.4% |
| 3614045 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.52 | 40.0 | 2.54e-01 | 86.8% | 52.5% |
| 3387106 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 43.0 | 4.25e-01 | 95.6% | 88.0% |
| 3188891 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.51 | 43.0 | 3.50e-01 | 100.0% | 79.3% |