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js4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00157
Bact-Virjs4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00157
Identity
- Kingdom:
- phage
Quality
90.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-56_182-222
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lciA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.69 | 51.0 | 4.60e-01 | 86.5% | 56.7% |
| 3lhlA00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.68 | 62.0 | 4.43e-01 | 100.0% | 96.7% |
| 4q48A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 56.0 | 4.46e-01 | 95.8% | 70.5% |
| 1gq6B00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.65 | 57.0 | 4.09e-01 | 100.0% | 91.4% |
| 2h5gB02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.65 | 58.0 | 5.06e-01 | 100.0% | 73.6% |
| 4xwwA02 | 3.40.50.10710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Metallo-hydrolase/oxidoreductase | 0.65 | 56.0 | 4.87e-01 | 95.8% | 94.0% |
| 8oosG01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 55.0 | 4.35e-01 | 95.8% | 60.8% |
| 3rc3A04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 55.0 | 4.82e-01 | 93.8% | 77.2% |
| 3mwyW04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 57.0 | 4.12e-01 | 99.0% | 70.3% |
| 6tm3A01 | 3.40.50.10280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylene-tetrahydromethanopterin dehydrogenase, N-terminal domain | 0.62 | 43.0 | 3.89e-01 | 72.9% | 86.2% |
| 2ocaA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 56.0 | 4.34e-01 | 100.0% | 73.6% |
| 1wekF01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 49.0 | 3.92e-01 | 86.5% | 57.8% |
| 2xn1A02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 50.0 | 3.47e-01 | 90.6% | 95.4% |
| 6bogA05 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 54.0 | 4.19e-01 | 100.0% | 83.3% |
| 6b4kB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 51.0 | 4.30e-01 | 95.8% | 68.2% |
| 7rbpA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 45.0 | 3.63e-01 | 82.3% | 52.8% |
| 1c4oA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 53.0 | 4.39e-01 | 100.0% | 73.1% |
| 6yhrA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 54.0 | 4.16e-01 | 100.0% | 60.0% |
| 1wvfA01 | 3.30.43.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 | 0.58 | 43.0 | 4.19e-01 | 78.1% | 86.1% |
| 6fwrA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 52.0 | 4.14e-01 | 100.0% | 83.0% |
| 4ud8B01 | 3.30.43.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 | 0.58 | 44.0 | 4.27e-01 | 80.2% | 98.1% |
| 1vluB02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.58 | 52.0 | 4.52e-01 | 100.0% | 77.4% |
| 2p6nA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 51.0 | 4.36e-01 | 100.0% | 73.8% |
| 2hyiC02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 51.0 | 4.27e-01 | 100.0% | 73.7% |
| 2h9aA01 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.57 | 48.0 | 3.62e-01 | 94.8% | 96.5% |
| 4ernA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 51.0 | 3.89e-01 | 100.0% | 66.8% |
| 1a1vA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 51.0 | 4.59e-01 | 100.0% | 81.5% |
| 5d79B01 | 3.30.43.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 | 0.57 | 42.0 | 4.34e-01 | 78.1% | 95.7% |
| 2xciA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.57 | 52.0 | 4.12e-01 | 100.0% | 77.0% |
| 2yjtD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 50.0 | 4.18e-01 | 100.0% | 72.9% |
| 4u63A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 45.0 | 3.80e-01 | 89.6% | 68.4% |
| 2as0A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 46.0 | 3.65e-01 | 96.9% | 87.6% |
| 4d86A01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.55 | 47.0 | 3.89e-01 | 100.0% | 81.9% |
| 2ab1A00 | 3.40.1230.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like | 0.54 | 42.0 | 3.95e-01 | 84.4% | 97.5% |
| 7sglD01 | 3.40.50.12650 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 47.0 | 4.19e-01 | 95.8% | 75.2% |
| 3tm4A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 46.0 | 3.87e-01 | 96.9% | 86.9% |
| 2gk6A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 48.0 | 3.52e-01 | 99.0% | 44.2% |
| 3cqjA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.54 | 47.0 | 3.45e-01 | 99.0% | 100.0% |
| 2f46A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 42.0 | 3.74e-01 | 100.0% | 57.7% |
| 6xehA01 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 47.0 | 4.53e-01 | 100.0% | 98.2% |
| 2vdwG00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 47.0 | 3.38e-01 | 100.0% | 38.0% |
| 2hlzA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 45.0 | 3.19e-01 | 96.9% | 97.6% |
| 1t35E00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 45.0 | 3.71e-01 | 100.0% | 96.7% |
| 3eb2A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 45.0 | 3.24e-01 | 100.0% | 72.2% |
ECOD (81)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4118774 | 2004.1.1.106 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N | 0.73 | 55.0 | 4.52e-01 | 87.5% | 45.3% |
| 4214511 | 2004.1.1.106 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N | 0.69 | 53.0 | 4.41e-01 | 87.5% | 47.3% |
| 3541131 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.67 | 59.0 | 3.65e-01 | 95.8% | 21.3% |
| 3773590 | 2004.1.1.952 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, Flavi_DEAD | 0.67 | 59.0 | 3.62e-01 | 95.8% | 21.5% |
| 3404309 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 57.0 | 3.53e-01 | 95.8% | 25.1% |
| 4529316 | 2003.1.5.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA | 0.67 | 61.0 | 4.58e-01 | 100.0% | 48.4% |
| 3703581 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.66 | 58.0 | 3.95e-01 | 95.8% | 51.5% |
| 3939575 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.66 | 58.0 | 4.35e-01 | 96.9% | 49.6% |
| 3697856 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.66 | 58.0 | 3.82e-01 | 95.8% | 62.6% |
| 3870276 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.66 | 57.0 | 4.16e-01 | 95.8% | 41.9% |
| 3379561 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.66 | 58.0 | 4.25e-01 | 96.9% | 69.0% |
| 3629834 | 2004.1.1.629 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, ResIII | 0.66 | 58.0 | 3.67e-01 | 96.9% | 25.3% |
| 4013735 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.66 | 57.0 | 3.87e-01 | 95.8% | 62.5% |
| 4003022 | 2004.1.1.428 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 | 0.66 | 57.0 | 3.53e-01 | 95.8% | 26.1% |
| 3473950 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.66 | 57.0 | 3.82e-01 | 95.8% | 41.6% |
| 3800610 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.66 | 57.0 | 3.95e-01 | 95.8% | 46.2% |
| 3614572 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.66 | 58.0 | 3.47e-01 | 96.9% | 26.8% |
| 4029920 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.66 | 57.0 | 3.96e-01 | 95.8% | 40.9% |
| 3876764 | 2004.1.1.428 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 | 0.66 | 57.0 | 3.42e-01 | 95.8% | 21.5% |
| 3627919 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 57.0 | 3.36e-01 | 95.8% | 19.5% |
| 3727265 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.65 | 57.0 | 4.15e-01 | 96.9% | 62.6% |
| 3400929 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.65 | 58.0 | 4.28e-01 | 97.9% | 65.6% |
| 4023455 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 57.0 | 3.97e-01 | 95.8% | 61.9% |
| 3502633 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.65 | 56.0 | 3.97e-01 | 95.8% | 44.3% |
| 3595906 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 58.0 | 4.09e-01 | 99.0% | 72.5% |
| 3347166 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.65 | 57.0 | 4.04e-01 | 95.8% | 54.0% |
| 1901291 | 7524.1.1.0 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like | 0.65 | 58.0 | 5.11e-01 | 100.0% | 75.7% |
| 3515721 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.65 | 56.0 | 4.30e-01 | 95.8% | 59.6% |
| 3882016 | 2004.1.1.698 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, ResIII, HDA2-3 | 0.65 | 56.0 | 3.36e-01 | 95.8% | 20.1% |
| 3731154 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.65 | 58.0 | 4.03e-01 | 99.0% | 68.4% |
| 3435952 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.65 | 58.0 | 4.22e-01 | 99.0% | 77.7% |
| 3829124 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.65 | 58.0 | 4.20e-01 | 99.0% | 79.3% |
| None | — | 0.65 | 56.0 | 4.10e-01 | 95.8% | 51.9% | |
| 4011170 | 101.1.2.702 ↗ | alpha arrays › HTH › HTH › winged helix domain › Helicase_C | 0.65 | 58.0 | 3.97e-01 | 99.0% | 68.8% |
| 3824313 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.64 | 58.0 | 4.61e-01 | 100.0% | 88.2% |
| 5057978 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.64 | 44.0 | 4.29e-01 | 86.5% | 63.8% |
| 3642128 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.64 | 58.0 | 3.84e-01 | 99.0% | 67.9% |
| 3210100 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.64 | 57.0 | 3.47e-01 | 99.0% | 35.5% |
| 3677144 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.64 | 58.0 | 4.52e-01 | 100.0% | 84.4% |
| 3677754 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.64 | 58.0 | 3.56e-01 | 99.0% | 37.4% |
| 3824007 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.64 | 58.0 | 3.80e-01 | 99.0% | 65.3% |
| 3303891 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.64 | 56.0 | 3.89e-01 | 96.9% | 58.2% |
| 3862952 | 2004.1.1.428 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 | 0.64 | 57.0 | 3.46e-01 | 99.0% | 35.9% |
| 3715586 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.64 | 57.0 | 3.55e-01 | 100.0% | 36.7% |
| 4075863 | 2004.1.1.106 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N | 0.64 | 51.0 | 4.30e-01 | 87.5% | 51.5% |
| 3733478 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.64 | 57.0 | 4.21e-01 | 100.0% | 76.1% |
| 3739042 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.64 | 57.0 | 4.13e-01 | 100.0% | 78.9% |
| 4320004 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.63 | 57.0 | 4.06e-01 | 99.0% | 84.3% |
| 3586813 | 2004.1.1.428 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 | 0.63 | 56.0 | 4.06e-01 | 99.0% | 71.1% |
| 3210494 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.63 | 57.0 | 3.67e-01 | 99.0% | 45.5% |
| 3209152 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.63 | 57.0 | 3.42e-01 | 100.0% | 43.7% |
| 3892447 | 2004.1.1.428 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 | 0.63 | 56.0 | 4.20e-01 | 99.0% | 78.4% |
| 3282718 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.63 | 56.0 | 4.33e-01 | 100.0% | 65.5% |
| 3918802 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.63 | 56.0 | 3.42e-01 | 99.0% | 38.1% |
| 3495611 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 54.0 | 4.35e-01 | 95.8% | 61.0% |
| 3186152 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.63 | 56.0 | 3.88e-01 | 99.0% | 66.2% |
| 3600081 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 56.0 | 4.26e-01 | 99.0% | 84.8% |
| 3736270 | 2004.1.1.656 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, VIGSSK | 0.63 | 56.0 | 3.34e-01 | 99.0% | 33.0% |
| 3717482 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.63 | 56.0 | 3.42e-01 | 99.0% | 32.9% |
| 4423734 | 2004.1.1.106 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N | 0.63 | 49.0 | 4.18e-01 | 86.5% | 49.7% |
| 3784896 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.63 | 56.0 | 4.05e-01 | 99.0% | 79.3% |
| 3208371 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.63 | 56.0 | 4.00e-01 | 100.0% | 68.9% |
| 3599830 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 56.0 | 4.14e-01 | 99.0% | 78.0% |
| 3833581 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.63 | 56.0 | 4.12e-01 | 100.0% | 76.1% |
| 3735943 | 376.1.1.139 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Helicase_C | 0.63 | 56.0 | 3.63e-01 | 100.0% | 81.6% |
| 3352223 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.62 | 55.0 | 3.92e-01 | 96.9% | 63.9% |
| 3220955 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.62 | 54.0 | 3.35e-01 | 99.0% | 25.8% |
| 4225764 | 2004.1.1.106 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N | 0.62 | 50.0 | 4.15e-01 | 89.6% | 48.6% |
| 1167674 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.62 | 56.0 | 4.32e-01 | 100.0% | 72.5% |
| 3245709 | 2004.1.1.304 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD,Helicase_C,RecQ_Zn_bind | 0.61 | 54.0 | 3.45e-01 | 100.0% | 22.9% |
| 3612550 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.61 | 54.0 | 4.05e-01 | 100.0% | 46.5% |
| 4021670 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.61 | 54.0 | 4.16e-01 | 100.0% | 70.0% |
| 3600711 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 52.0 | 4.41e-01 | 94.8% | 72.5% |
| 3482830 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.60 | 54.0 | 3.62e-01 | 100.0% | 44.3% |
| 3928809 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.60 | 51.0 | 3.86e-01 | 95.8% | 55.0% |
| 3933477 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.59 | 52.0 | 4.37e-01 | 100.0% | 75.3% |
| None | — | 0.58 | 52.0 | 4.15e-01 | 100.0% | 63.6% | |
| 5043073 | 2488.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_3 | 0.58 | 46.0 | 3.70e-01 | 87.5% | 99.5% |
| 3679871 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.57 | 51.0 | 3.32e-01 | 100.0% | 27.1% |
| None | — | 0.57 | 50.0 | 3.30e-01 | 100.0% | 25.9% | |
| 3270379 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.56 | 46.0 | 3.89e-01 | 93.8% | 76.6% |
D2
high
residues 61-175
Domain cluster:
rep: js4906-29-5_S40_scaffold_90_prodigal-single.1__X__X__00010__D90-210
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.63 | 37.0 | 4.24e-01 | 79.1% | 81.5% |
| 7akwA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.62 | 46.0 | 3.75e-01 | 77.4% | 68.9% |
| 4a64C03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.58 | 31.0 | 3.29e-01 | 79.1% | 58.0% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 30.0 | 3.52e-01 | 83.5% | 76.9% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.54 | 36.0 | 3.81e-01 | 97.4% | 75.2% |
| 3v93F01 | 1.10.1300.10 | Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain | 0.53 | 47.0 | 3.51e-01 | 100.0% | 84.5% |
| 8e9gK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 33.0 | 3.69e-01 | 78.3% | 78.0% |
| 3p5pA03 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 46.0 | 3.44e-01 | 97.4% | 62.6% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 37.0 | 3.97e-01 | 98.3% | 85.4% |
| 5x9vA01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.52 | 46.0 | 3.68e-01 | 100.0% | 96.3% |
| 6z01B03 | 1.10.132.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.52 | 38.0 | 3.48e-01 | 76.5% | 83.8% |
| 1hm7B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 45.0 | 3.41e-01 | 100.0% | 62.3% |
| 1ylmA00 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.51 | 40.0 | 3.80e-01 | 87.0% | 69.0% |
| 2nnwA02 | 1.10.287.4070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 40.0 | 3.90e-01 | 88.7% | 76.4% |
| 2g47A03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 44.0 | 3.56e-01 | 96.5% | 80.6% |
| 7eu3E01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 32.0 | 3.62e-01 | 78.3% | 83.9% |
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.50 | 36.0 | 3.45e-01 | 73.9% | 64.6% |
| 1vj7B01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.50 | 43.0 | 3.80e-01 | 95.7% | 71.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3817871 | 109.4.1.1741 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_At1g68980 | 0.60 | 35.0 | 3.09e-01 | 81.7% | 39.4% |
| 3730200 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.59 | 38.0 | 3.71e-01 | 80.9% | 58.5% |
| 4997940 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.58 | 43.0 | 4.57e-01 | 93.9% | 89.0% |
| 5082139 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.56 | 39.0 | 3.89e-01 | 87.0% | 67.2% |
| 4370662 | 601.2.1.6 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Cytochrom_B562 | 0.56 | 36.0 | 3.83e-01 | 78.3% | 74.7% |
| 3720095 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.53 | 45.0 | 3.59e-01 | 93.9% | 75.3% |
| 3617957 | 3198.1.1.1 ↗ | alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA | 0.52 | 37.0 | 3.74e-01 | 74.8% | 94.2% |
| 4993560 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.52 | 45.0 | 3.96e-01 | 99.1% | 80.0% |
| 3431118 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.52 | 36.0 | 3.75e-01 | 72.2% | 80.0% |
| 5050851 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.51 | 36.0 | 3.52e-01 | 93.0% | 64.6% |
| 4541110 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.51 | 45.0 | 3.56e-01 | 100.0% | 79.6% |
| 3755341 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.51 | 36.0 | 3.03e-01 | 74.8% | 88.6% |
| 3598305 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.51 | 45.0 | 3.63e-01 | 100.0% | 78.7% |
| 3412603 | 3567.1.1.154 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PF30089 | 0.51 | 31.0 | 3.05e-01 | 72.2% | 56.0% |
| 3696454 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.50 | 43.0 | 4.02e-01 | 98.3% | 76.4% |
| 4038138 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.50 | 35.0 | 3.36e-01 | 71.3% | 97.7% |