←Back to structures
js4906-29-5_S40_scaffold_90_prodigal-single.1__X__X__00014
Bact-Virjs4906-29-5_S40_scaffold_90_prodigal-single.1__X__X__00014
Identity
- Kingdom:
- phage
Quality
92.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-108
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14018.12 best | DUF4234 | 86.2 | 2.10e-24 | 66.7% | 94.4% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.64 | 45.0 | 4.13e-01 | 73.5% | 89.6% |
| 7c1iA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.60 | 43.0 | 4.33e-01 | 74.5% | 83.0% |
| 7akwA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.59 | 51.0 | 4.11e-01 | 100.0% | 91.0% |
| 3hmfA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 40.0 | 3.91e-01 | 73.5% | 81.0% |
| 3iu5A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 40.0 | 3.90e-01 | 73.5% | 82.5% |
| 3djbA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.56 | 42.0 | 4.36e-01 | 79.4% | 97.9% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.55 | 37.0 | 3.21e-01 | 70.6% | 55.2% |
| 1e3dB00 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.54 | 47.0 | 3.00e-01 | 97.1% | 85.5% |
| 3cwzB01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.54 | 42.0 | 3.83e-01 | 86.3% | 80.1% |
| 5ulcX00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.50 | 40.0 | 3.82e-01 | 86.3% | 85.2% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4506965 | 3567.1.1.90 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PFF1_TM | 0.61 | 45.0 | 3.23e-01 | 77.5% | 64.6% |
| None | — | 0.61 | 51.0 | 3.68e-01 | 93.1% | 91.1% | |
| 4955212 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.60 | 43.0 | 3.58e-01 | 74.5% | 76.8% |
| 3221689 | 5001.1.1.16 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srt | 0.60 | 49.0 | 3.66e-01 | 92.2% | 89.5% |
| 3398463 | 103.1.1.142 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_Sid-3 | 0.59 | 36.0 | 4.09e-01 | 80.4% | 82.7% |
| 3285217 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.56 | 47.0 | 3.69e-01 | 93.1% | 97.0% |
| 3917944 | 5001.1.1.32 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Solute_trans_a | 0.56 | 49.0 | 3.65e-01 | 100.0% | 82.5% |
| 3588149 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.55 | 48.0 | 3.50e-01 | 100.0% | 94.8% |
| 4608728 | 633.1.1.6 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › PF27833 | 0.55 | 40.0 | 4.00e-01 | 76.5% | 79.0% |
| 3562136 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.54 | 37.0 | 3.26e-01 | 70.6% | 84.5% |
| 3933323 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.54 | 41.0 | 3.91e-01 | 80.4% | 74.2% |
| 3741398 | 632.1.1.8 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › SOG2 | 0.53 | 41.0 | 3.83e-01 | 82.4% | 84.6% |
| 3498251 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 40.0 | 3.51e-01 | 82.4% | 54.4% |
| 3937960 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.52 | 31.0 | 3.32e-01 | 77.5% | 68.2% |
| 3964012 | 3831.1.1.1 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI | 0.52 | 40.0 | 3.97e-01 | 92.2% | 75.5% |
| 4989157 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.52 | 44.0 | 4.44e-01 | 100.0% | 97.0% |
| 3481293 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.51 | 30.0 | 3.31e-01 | 78.4% | 72.5% |
| 3898675 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.51 | 34.0 | 3.55e-01 | 83.3% | 73.1% |
| 5029782 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.50 | 40.0 | 4.22e-01 | 92.2% | 98.9% |
| 3163576 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.50 | 43.0 | 3.39e-01 | 96.1% | 83.5% |
| 3989298 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.50 | 44.0 | 3.82e-01 | 99.0% | 96.4% |