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js4906-29-5_S40_scaffold_90_prodigal-single.1__X__X__00040
Bact-Virjs4906-29-5_S40_scaffold_90_prodigal-single.1__X__X__00040
Identity
- Kingdom:
- phage
Quality
74.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-62
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kt3B00 | 3.10.450.170 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens | 0.61 | 50.0 | 3.81e-01 | 100.0% | 48.4% |
| 2ysiA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.60 | 37.0 | 4.18e-01 | 100.0% | 87.9% |
| 1vw5A00 | 3.30.70.1420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Structure from the mobile metagenome of cole harbour salt marsh: integron cassette protein hfx_cass1 | 0.59 | 41.0 | 3.00e-01 | 78.3% | 92.7% |
| 4esnA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.57 | 40.0 | 3.48e-01 | 78.3% | 50.0% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 47.0 | 3.60e-01 | 100.0% | 78.3% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.55 | 45.0 | 3.95e-01 | 100.0% | 61.0% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 44.0 | 4.06e-01 | 100.0% | 71.2% |
| 6ofsA03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.54 | 45.0 | 2.98e-01 | 100.0% | 100.0% |
| 2atcB02 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.54 | 37.0 | 3.59e-01 | 71.7% | 86.5% |
| 2cs7A00 | 3.10.50.90 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.53 | 39.0 | 3.69e-01 | 80.4% | 83.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928056 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 47.0 | 4.64e-01 | 76.1% | 98.0% |
| 3741021 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 42.0 | 3.99e-01 | 73.9% | 85.0% |
| 3328891 | 4.1.1.296 ↗ | beta barrels › SH3 › SH3 › SH3 › TDBD | 0.60 | 39.0 | 3.54e-01 | 93.5% | 47.7% |
| 3925975 | 6.1.1.4 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin | 0.57 | 41.0 | 2.84e-01 | 80.4% | 39.5% |
| 3618504 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.56 | 43.0 | 4.19e-01 | 100.0% | 76.7% |
| 5013333 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 40.0 | 4.41e-01 | 97.8% | 100.0% |
| 3871062 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 41.0 | 4.24e-01 | 100.0% | 95.0% |
| 3840027 | 218.1.1.9 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › PF27310 | 0.54 | 41.0 | 3.71e-01 | 89.1% | 92.9% |
| 3995179 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 41.0 | 4.16e-01 | 95.7% | 91.1% |
| 3357361 | 267.1.1.2 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Hydrolase | 0.52 | 40.0 | 2.94e-01 | 89.1% | 45.0% |
| 3584345 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.52 | 38.0 | 2.89e-01 | 87.0% | 48.1% |
| 4040221 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.51 | 38.0 | 2.92e-01 | 84.8% | 46.7% |
| 4978264 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 40.0 | 3.20e-01 | 93.5% | 81.9% |
| 3823898 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 40.0 | 3.86e-01 | 97.8% | 78.2% |
| 3185844 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 43.0 | 3.85e-01 | 100.0% | 84.3% |
| 4943940 | 267.1.1.2 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Hydrolase | 0.51 | 39.0 | 3.01e-01 | 91.3% | 45.6% |
| 4634499 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.50 | 38.0 | 3.67e-01 | 95.7% | 73.3% |