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js4906-29-5_S40_scaffold_90_prodigal-single.1__X__X__00051
Bact-Virjs4906-29-5_S40_scaffold_90_prodigal-single.1__X__X__00051
Identity
- Kingdom:
- phage
Quality
77.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-99
Domain cluster:
representative
D2
medium
residues 100-194
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p32B00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.61 | 45.0 | 3.68e-01 | 76.8% | 66.7% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 50.0 | 4.18e-01 | 90.5% | 58.9% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.60 | 43.0 | 3.70e-01 | 75.8% | 76.6% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.60 | 46.0 | 4.34e-01 | 82.1% | 74.6% |
| 4u1eI00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 47.0 | 3.31e-01 | 89.5% | 50.6% |
| 8hpoK01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 47.0 | 3.13e-01 | 88.4% | 55.4% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.58 | 37.0 | 3.69e-01 | 80.0% | 61.6% |
| 7d8gA01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.58 | 43.0 | 3.63e-01 | 78.9% | 74.3% |
| 1hdhA02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.58 | 37.0 | 4.03e-01 | 81.1% | 77.9% |
| 2wjsA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 41.0 | 3.40e-01 | 74.7% | 66.9% |
| 5uaiA01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.55 | 48.0 | 3.84e-01 | 100.0% | 87.4% |
| 3lp9A00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.55 | 42.0 | 3.24e-01 | 82.1% | 99.6% |
| 6jhpA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.55 | 47.0 | 3.37e-01 | 96.8% | 98.7% |
| 2jxpA01 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.54 | 43.0 | 3.85e-01 | 89.5% | 92.9% |
| 3pveA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 40.0 | 3.29e-01 | 78.9% | 61.7% |
| 1pz7A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 39.0 | 3.18e-01 | 78.9% | 57.4% |
| 2ovsA00 | 2.40.128.380 | Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR | 0.53 | 40.0 | 3.75e-01 | 80.0% | 78.0% |
| 5ds1A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 35.0 | 3.54e-01 | 74.7% | 69.6% |
| 2xvlA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.52 | 46.0 | 3.50e-01 | 100.0% | 49.6% |
| 3ga4A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 40.0 | 3.46e-01 | 83.2% | 87.8% |
| 1wxrA03 | 3.30.160.280 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 38.0 | 4.21e-01 | 86.3% | 98.7% |
| 5kkuD00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.51 | 41.0 | 2.95e-01 | 87.4% | 98.9% |
| 1cb8A03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.51 | 36.0 | 3.53e-01 | 76.8% | 75.5% |
| 5hkeA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.50 | 39.0 | 2.78e-01 | 83.2% | 86.6% |
| 4ba0A01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.50 | 43.0 | 3.43e-01 | 95.8% | 96.5% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3244243 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.69 | 41.0 | 3.22e-01 | 80.0% | 28.7% |
| 3316079 | 220.1.1.183 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RDR2 | 0.68 | 50.0 | 4.30e-01 | 76.8% | 69.3% |
| 3227881 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.68 | 41.0 | 3.43e-01 | 81.1% | 34.5% |
| 3218627 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.68 | 42.0 | 3.21e-01 | 82.1% | 27.0% |
| 3236787 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.68 | 41.0 | 3.68e-01 | 81.1% | 43.8% |
| 3211176 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.67 | 41.0 | 2.98e-01 | 81.1% | 22.7% |
| 3225057 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.67 | 41.0 | 3.31e-01 | 81.1% | 31.9% |
| 3219544 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.65 | 43.0 | 3.05e-01 | 82.1% | 21.4% |
| 3218903 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.65 | 41.0 | 3.22e-01 | 80.0% | 29.0% |
| 3235669 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.64 | 40.0 | 3.63e-01 | 81.1% | 47.2% |
| 3233005 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.64 | 42.0 | 3.13e-01 | 83.2% | 25.5% |
| 3212555 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.64 | 40.0 | 3.60e-01 | 81.1% | 46.2% |
| 3242741 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.63 | 42.0 | 3.05e-01 | 81.1% | 24.0% |
| 3212107 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.63 | 45.0 | 3.33e-01 | 81.1% | 27.3% |
| 5053431 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.63 | 43.0 | 3.61e-01 | 86.3% | 42.6% |
| 3228574 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.63 | 39.0 | 2.85e-01 | 81.1% | 22.8% |
| 3737176 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.63 | 51.0 | 5.32e-01 | 93.7% | 97.6% |
| 3242542 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.63 | 40.0 | 2.90e-01 | 81.1% | 23.5% |
| 3236616 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.61 | 39.0 | 2.81e-01 | 82.1% | 22.6% |
| 4031368 | 3264.1.1.0 ↗ | 0.61 | 43.0 | 3.69e-01 | 86.3% | 47.6% | |
| 3799467 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.59 | 40.0 | 3.41e-01 | 70.5% | 63.2% |
| 4941285 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.59 | 31.0 | 3.56e-01 | 73.7% | 67.1% |
| 4018312 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.56 | 43.0 | 3.36e-01 | 82.1% | 46.3% |
| 5030621 | 241.9.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 | 0.56 | 45.0 | 4.32e-01 | 88.4% | 75.5% |
| 3188812 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.54 | 48.0 | 3.47e-01 | 97.9% | 56.3% |
| 4992060 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.54 | 41.0 | 3.36e-01 | 81.1% | 92.6% |
| 3443190 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.54 | 43.0 | 3.35e-01 | 87.4% | 85.1% |
| 4129272 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 41.0 | 3.61e-01 | 81.1% | 78.6% |
| 3448051 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 45.0 | 3.42e-01 | 95.8% | 79.6% |
| 3877056 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.52 | 43.0 | 3.11e-01 | 92.6% | 39.9% |
| 3624733 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.52 | 45.0 | 3.89e-01 | 96.8% | 69.3% |
| 5076987 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.52 | 41.0 | 2.86e-01 | 84.2% | 70.5% |
| 142929 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.52 | 45.0 | 3.67e-01 | 100.0% | 60.8% |
| 4961766 | 241.15.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › Spo0M | 0.50 | 42.0 | 4.00e-01 | 92.6% | 91.3% |
| 3476563 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 36.0 | 3.36e-01 | 74.7% | 97.5% |
| 5043489 | 3504.2.1.0 ↗ | beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins | 0.50 | 36.0 | 3.39e-01 | 75.8% | 99.2% |
| 4031750 | 274.1.1.25 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF | 0.50 | 38.0 | 3.81e-01 | 80.0% | 82.8% |
| 2002 | 12.2.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Lyase_8_C | 0.50 | 37.0 | 3.73e-01 | 80.0% | 83.0% |
| 3748951 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 43.0 | 2.63e-01 | 97.9% | 39.4% |