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js4906-29-5_S40_scaffold_9_prodigal-single.1__X__X__00071

Bact-Vir

js4906-29-5_S40_scaffold_9_prodigal-single.1__X__X__00071

Identity

Kingdom:
phage

Quality

91.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3sylA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.89 81.0 5.48e-01 100.0% 30.2%
8dgfB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 63.0 4.43e-01 100.0% 29.3%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 63.0 3.85e-01 100.0% 15.9%
4o32C00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.72 49.0 4.27e-01 72.9% 46.2%
3i3vB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.72 48.0 3.40e-01 71.2% 23.7%
3eccA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 61.0 4.47e-01 100.0% 40.1%
2xauA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 56.0 3.80e-01 100.0% 22.8%
3tcoA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.70 47.0 3.93e-01 72.9% 39.6%
3h5iA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.69 51.0 4.07e-01 100.0% 38.4%
4c6rA00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.67 57.0 4.24e-01 100.0% 48.1%
2dc0A00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.67 44.0 2.65e-01 71.2% 9.4%
3a0uA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 48.0 3.94e-01 100.0% 40.9%
2qvgA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 48.0 3.87e-01 100.0% 39.1%
4q1tB01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.63 52.0 3.56e-01 100.0% 27.2%
2qsiA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 42.0 3.80e-01 71.2% 49.4%
2qxyA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 46.0 3.81e-01 100.0% 41.2%
3sy8C02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.62 52.0 3.51e-01 100.0% 30.6%
2dlxA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 42.0 3.44e-01 72.9% 39.8%
1ydhA00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 51.0 3.66e-01 100.0% 34.2%
4zylB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 45.0 3.51e-01 100.0% 36.1%
6eudA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 48.0 3.61e-01 100.0% 71.9%
6gs2C01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.58 49.0 3.32e-01 100.0% 52.7%
4p1eA00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.57 38.0 2.51e-01 71.2% 13.9%
3fkqA01 3.40.50.10850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ntrc-like two-domain protein. 0.57 37.0 3.01e-01 71.2% 33.6%
1nmnA00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.55 46.0 3.79e-01 100.0% 70.8%
2n3zA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 46.0 4.02e-01 100.0% 66.7%
3blvC00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.54 46.0 2.91e-01 100.0% 24.5%
2hxwA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 45.0 3.71e-01 100.0% 73.7%
3vnaA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 43.0 3.38e-01 100.0% 66.9%
1abeA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 37.0 2.88e-01 76.3% 34.8%
3n5lA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 39.0 3.15e-01 86.4% 98.5%
1zjcA01 3.40.1830.10 Alpha Beta › 3-Layer(aba) Sandwich › Thermophilic metalloprotease-like › Thermophilic metalloprotease (M29) 0.52 42.0 3.16e-01 100.0% 43.9%
3qufA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 43.0 3.24e-01 100.0% 46.2%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3957732 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.97 93.0 5.98e-01 100.0% 28.6%
3955103 2004.1.1.415 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, RuvB_N 0.95 90.0 6.00e-01 100.0% 33.3%
3956498 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.94 89.0 5.37e-01 100.0% 20.6%
None 0.93 87.0 5.80e-01 100.0% 33.0%
1600541 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.90 82.0 5.40e-01 100.0% 27.3%
4111036 2004.1.1.63 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE 0.82 68.0 4.28e-01 100.0% 18.3%
4979214 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.76 63.0 4.20e-01 100.0% 24.5%
3291455 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.75 66.0 4.63e-01 100.0% 31.1%
4079762 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.75 65.0 3.88e-01 100.0% 13.7%
3740383 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.74 60.0 3.68e-01 100.0% 14.5%
5071455 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.74 62.0 4.09e-01 100.0% 23.4%
3253840 2004.1.1.364 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C 0.74 61.0 3.59e-01 100.0% 11.1%
4955144 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.74 62.0 4.08e-01 100.0% 21.5%
5073403 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.73 60.0 4.10e-01 100.0% 25.7%
3480147 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.73 62.0 4.67e-01 100.0% 38.6%
3940947 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 58.0 3.65e-01 100.0% 16.1%
3194167 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.72 58.0 3.95e-01 100.0% 23.6%
4927988 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.72 59.0 4.20e-01 91.5% 47.5%
4013629 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 58.0 3.93e-01 100.0% 23.6%
4933061 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.72 58.0 4.05e-01 100.0% 26.3%
3700609 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.72 58.0 3.75e-01 100.0% 19.3%
5022254 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.72 58.0 3.99e-01 100.0% 25.1%
4944202 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.72 57.0 3.98e-01 100.0% 25.9%
5080390 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 58.0 4.08e-01 100.0% 27.7%
4965162 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.71 57.0 3.99e-01 100.0% 26.5%
5079125 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.71 57.0 3.88e-01 100.0% 23.5%
5001356 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.71 56.0 3.34e-01 100.0% 11.6%
4499045 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.71 57.0 4.09e-01 100.0% 28.9%
4949230 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.71 58.0 3.75e-01 100.0% 20.1%
3675939 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 57.0 3.27e-01 100.0% 9.0%
4948563 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.71 59.0 4.06e-01 94.9% 36.5%
3403635 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.70 57.0 3.87e-01 100.0% 24.1%
4014233 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 57.0 3.82e-01 100.0% 22.5%
4947373 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.70 57.0 3.89e-01 100.0% 25.1%
4977852 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 56.0 3.82e-01 100.0% 23.5%
4972048 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.69 56.0 3.32e-01 100.0% 11.6%
4160313 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.69 60.0 3.92e-01 100.0% 34.1%
4085547 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.69 60.0 3.90e-01 100.0% 34.1%
5031973 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.68 54.0 3.81e-01 100.0% 27.4%
4250183 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.68 55.0 3.62e-01 100.0% 20.8%
3382550 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 54.0 3.71e-01 100.0% 24.1%
4665962 7531.1.1.0 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like 0.68 58.0 3.84e-01 100.0% 35.4%
3979371 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.67 53.0 3.80e-01 100.0% 27.9%
5042259 2002.1.1.77 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.67 57.0 4.09e-01 100.0% 37.6%
3719635 7512.1.1.88 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_61 0.67 45.0 3.34e-01 72.9% 25.6%
4404588 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.67 57.0 3.70e-01 100.0% 36.9%
None 0.67 57.0 3.80e-01 100.0% 23.7%
3350449 2007.9.1.1 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR 0.66 57.0 4.02e-01 100.0% 42.1%
3504537 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.66 52.0 3.51e-01 100.0% 22.1%
3880681 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.65 45.0 4.20e-01 72.9% 60.0%
3299486 2007.9.1.1 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR 0.65 55.0 4.60e-01 100.0% 74.5%
4943578 301.1.1.0 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like 0.65 45.0 3.84e-01 74.6% 91.0%
4605242 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.64 53.0 3.60e-01 100.0% 26.2%
4335045 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.64 42.0 3.50e-01 72.9% 38.1%
2079610 2006.1.1.16 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_like,Hydrolase_6 0.64 53.0 5.12e-01 100.0% 90.1%
4263677 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.63 45.0 3.75e-01 74.6% 86.7%
3587144 2007.1.4.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat 0.61 52.0 4.07e-01 100.0% 71.1%
3596594 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.59 48.0 3.39e-01 100.0% 29.6%
4193230 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.59 41.0 3.75e-01 72.9% 55.0%
4373106 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.58 51.0 3.88e-01 100.0% 55.7%
1523449 7523.1.1.16 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DctP 0.57 38.0 3.14e-01 71.2% 33.9%
4021437 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 47.0 3.33e-01 100.0% 41.8%
4890328 2004.1.1.734 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, RIG-I_C 0.56 47.0 3.33e-01 100.0% 32.1%
1521770 7523.1.1.16 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DctP 0.56 39.0 3.20e-01 71.2% 37.0%
4007641 2007.1.2.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_1 0.54 46.0 3.63e-01 100.0% 61.5%
3989017 2007.1.2.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_1 0.54 44.0 3.48e-01 100.0% 57.2%
4983076 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.53 35.0 3.11e-01 72.9% 41.0%
1593856 2007.1.2.11 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.50 41.0 3.53e-01 100.0% 74.8%
D2 high residues 73-147
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17866.9 best AAA_lid_6 46.3 5.90e-12 96.0% 80.7%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3sykA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.93 88.0 8.16e-01 100.0% 86.7%
2v6zM00 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.83 67.0 6.74e-01 100.0% 86.7%
1iqpA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.83 59.0 6.34e-01 100.0% 87.5%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.81 63.0 6.12e-01 100.0% 75.9%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.80 63.0 6.09e-01 100.0% 75.9%
1njgB01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.80 57.0 5.85e-01 100.0% 78.1%
2kebA00 1.10.8.530 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain 0.77 59.0 5.86e-01 100.0% 78.2%
1jqjD03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.77 57.0 5.44e-01 100.0% 68.6%
3zh9B02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.76 56.0 5.78e-01 100.0% 84.3%
1e94E03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.73 65.0 5.84e-01 100.0% 84.0%
1sxjC02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.73 56.0 5.80e-01 100.0% 89.9%
3kxeA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.71 54.0 5.03e-01 81.3% 89.4%
4fwdA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.70 57.0 5.68e-01 100.0% 87.2%
3d8bB02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.70 61.0 5.93e-01 100.0% 87.8%
7kypB01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.70 60.0 4.05e-01 94.7% 54.9%
4ciuA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 60.0 4.54e-01 100.0% 92.7%
5vjhB02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 59.0 5.60e-01 100.0% 80.4%
5vc7A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 52.0 5.03e-01 100.0% 94.3%
4hh5A00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.61 46.0 3.67e-01 84.0% 69.9%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 49.0 4.00e-01 92.0% 86.8%
4iu9B01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.59 43.0 3.05e-01 76.0% 64.7%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.58 40.0 3.99e-01 70.7% 69.6%
3zokA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.58 50.0 3.74e-01 96.0% 90.6%
1ujnA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.58 49.0 3.86e-01 96.0% 88.1%
1d0cA03 3.90.1230.10 Alpha Beta › Alpha-Beta Complex › Bovine Endothelial Nitric Oxide Synthase Heme Domain; Chain: A,domain 3 › Nitric Oxide Synthase; Chain A, domain 3 0.58 40.0 3.87e-01 73.3% 67.4%
1l9lA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.54 37.0 3.72e-01 100.0% 70.3%
3d6kA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 42.0 3.33e-01 85.3% 64.0%
1vgpA02 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.54 38.0 3.47e-01 88.0% 54.8%
3itfA00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 40.0 3.57e-01 84.0% 83.8%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 42.0 3.59e-01 100.0% 54.6%
6s8bA01 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.52 45.0 3.63e-01 97.3% 80.3%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 35.0 2.98e-01 70.7% 56.4%
1m7wA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.50 43.0 3.15e-01 98.7% 67.7%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4013995 148.1.3.23 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 0.95 91.0 8.64e-01 100.0% 90.6%
4649085 148.1.3.23 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 0.94 90.0 7.85e-01 100.0% 81.9%
4680072 148.1.3.23 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 0.93 88.0 7.88e-01 100.0% 81.0%
4415082 148.1.3.23 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 0.93 88.0 8.20e-01 100.0% 91.1%
4011290 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.93 87.0 8.31e-01 100.0% 89.4%
4011919 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.92 87.0 7.49e-01 100.0% 96.4%
4446481 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.89 84.0 6.94e-01 100.0% 69.9%
3953286 148.1.3.23 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 0.89 83.0 7.16e-01 100.0% 83.6%
3289682 148.1.3.23 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 0.88 82.0 7.07e-01 100.0% 88.2%
4238496 148.1.3.23 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 0.88 81.0 7.16e-01 100.0% 85.7%
4020961 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.87 80.0 7.53e-01 100.0% 92.2%
5020254 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.86 63.0 6.72e-01 100.0% 89.2%
5040633 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.85 61.0 6.48e-01 100.0% 86.2%
4011306 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.85 77.0 7.27e-01 100.0% 96.7%
3926437 148.1.3.18 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.85 66.0 6.07e-01 100.0% 65.3%
4345957 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.84 63.0 6.36e-01 100.0% 80.0%
4966288 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.83 60.0 6.36e-01 100.0% 86.2%
5050506 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.83 72.0 6.87e-01 100.0% 82.4%
4201751 148.1.3.21 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_4 0.82 64.0 6.16e-01 100.0% 72.9%
5046176 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.82 59.0 6.26e-01 100.0% 86.2%
4970852 148.1.3.18 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.82 64.0 5.90e-01 100.0% 66.0%
4069825 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.82 59.0 6.26e-01 100.0% 86.2%
4979456 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.82 59.0 5.91e-01 100.0% 74.7%
4980405 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.81 58.0 6.14e-01 100.0% 86.2%
4994187 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.81 58.0 6.12e-01 100.0% 86.2%
3950635 148.1.3.47 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid 0.80 60.0 6.16e-01 100.0% 84.3%
5040775 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.80 57.0 6.22e-01 100.0% 93.3%
5082447 148.1.3.47 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid 0.80 59.0 5.91e-01 100.0% 77.3%
3310234 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.80 62.0 6.29e-01 100.0% 84.0%
4462629 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.79 56.0 6.00e-01 100.0% 86.2%
3247646 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.79 56.0 5.95e-01 100.0% 86.2%
4993112 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.79 57.0 4.70e-01 100.0% 43.8%
5041664 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.79 69.0 6.60e-01 100.0% 83.5%
5057800 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.79 57.0 6.02e-01 100.0% 87.7%
3667481 148.1.3.9 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Dpoe2NT 0.78 60.0 5.90e-01 98.7% 77.5%
5027108 148.1.3.222 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27254 0.75 54.0 5.95e-01 100.0% 95.0%
3614578 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.75 62.0 6.03e-01 100.0% 81.2%
4948160 148.1.3.405 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rep_fac_C 0.75 54.0 5.77e-01 100.0% 89.2%
3601921 148.1.3.8 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small 0.74 67.0 5.87e-01 100.0% 80.9%
3817287 148.1.3.17 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.74 55.0 5.16e-01 78.7% 76.7%
4027606 148.1.3.8 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small 0.73 65.0 5.68e-01 100.0% 77.4%
4579942 148.1.3.8 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small 0.73 65.0 5.75e-01 100.0% 80.9%
4932414 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.73 49.0 5.38e-01 98.7% 88.3%
4237904 148.1.3.17 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.72 53.0 4.38e-01 81.3% 43.7%
3701122 148.1.3.17 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.72 52.0 5.42e-01 77.3% 97.1%
3068146 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 53.0 4.91e-01 78.7% 73.4%
3681767 148.1.3.26 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 0.71 62.0 5.33e-01 100.0% 68.0%
3583084 148.1.3.9 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Dpoe2NT 0.71 64.0 6.14e-01 100.0% 92.9%
3164868 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 62.0 6.01e-01 100.0% 88.2%
3191809 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.69 61.0 5.40e-01 100.0% 93.6%
3974634 148.1.3.261 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small, AAA_lid_9 0.68 59.0 3.97e-01 100.0% 28.1%
4209656 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 60.0 5.40e-01 100.0% 73.3%
3166045 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.68 58.0 4.01e-01 94.7% 61.6%
4964574 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.68 57.0 3.85e-01 93.3% 34.4%
3271238 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.60 42.0 3.23e-01 74.7% 56.2%
3388616 108.1.1.26 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.60 46.0 3.50e-01 84.0% 50.3%
5029483 3896.1.1.2 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › DUF92 0.58 50.0 3.68e-01 100.0% 77.2%
4446282 3345.1.1.1 alpha arrays › MRG domain › MRG domain › MRG domain › MRG 0.58 41.0 3.27e-01 77.3% 51.4%
4033271 4125.1.1.0 alpha superhelices › BH3980-like › BH3980-like › BH3980-like 0.57 43.0 4.04e-01 97.3% 64.0%
3389719 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.55 47.0 4.08e-01 93.3% 80.9%
4342237 3345.1.1.1 alpha arrays › MRG domain › MRG domain › MRG domain › MRG 0.53 43.0 3.34e-01 94.7% 62.6%