←Back to structures
k141_307134_prodigal-single.1__X__X__00010
Bact-Virk141_307134_prodigal-single.1__X__X__00010
Identity
- Kingdom:
- phage
Quality
76.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-72
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 57.0 | 4.90e-01 | 91.2% | 52.7% |
| 2lbfB01 | 1.10.10.1410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.74 | 56.0 | 5.30e-01 | 89.5% | 68.1% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 61.0 | 6.14e-01 | 98.2% | 96.4% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.72 | 59.0 | 4.98e-01 | 98.2% | 53.6% |
| 7ccmB01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.71 | 59.0 | 4.53e-01 | 98.2% | 47.6% |
| 4nmyA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.70 | 56.0 | 3.90e-01 | 89.5% | 70.6% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.70 | 45.0 | 4.55e-01 | 71.9% | 66.7% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.69 | 55.0 | 4.67e-01 | 86.0% | 58.9% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 56.0 | 5.26e-01 | 98.2% | 88.0% |
| 3f6tA02 | 1.10.20.110 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.66 | 57.0 | 4.28e-01 | 100.0% | 55.1% |
| 3tviA01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.66 | 45.0 | 2.88e-01 | 71.9% | 20.0% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.65 | 46.0 | 4.38e-01 | 86.0% | 62.3% |
| 4i5jA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.64 | 44.0 | 3.20e-01 | 71.9% | 28.7% |
| 1f5qB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 48.0 | 3.76e-01 | 86.0% | 40.6% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 52.0 | 4.49e-01 | 100.0% | 56.6% |
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 53.0 | 5.32e-01 | 98.2% | 96.6% |
| 3mw6B00 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.63 | 51.0 | 4.42e-01 | 98.2% | 56.4% |
| 7p2yd01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.63 | 52.0 | 4.51e-01 | 100.0% | 59.6% |
| 2ebiA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 53.0 | 5.11e-01 | 98.2% | 86.4% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.62 | 51.0 | 4.68e-01 | 96.5% | 78.5% |
| 3ff5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 46.0 | 4.67e-01 | 100.0% | 92.6% |
| 2b1eA02 | 1.20.1310.30 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › | 0.59 | 51.0 | 3.81e-01 | 100.0% | 53.0% |
| 3p2mA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 51.0 | 3.27e-01 | 100.0% | 28.5% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.59 | 45.0 | 4.17e-01 | 84.2% | 66.2% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 44.0 | 4.10e-01 | 84.2% | 81.7% |
| 3qitB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 44.0 | 2.92e-01 | 100.0% | 19.1% |
| 2gytA01 | 1.10.287.2070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 43.0 | 4.02e-01 | 86.0% | 100.0% |
| 4f0qA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.55 | 48.0 | 3.30e-01 | 96.5% | 84.4% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 44.0 | 4.08e-01 | 98.2% | 69.2% |
| 3ulqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 43.0 | 4.36e-01 | 100.0% | 86.2% |
| 1vhnA02 | 1.10.1200.80 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 | 0.55 | 43.0 | 4.15e-01 | 94.7% | 90.1% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.55 | 42.0 | 3.70e-01 | 84.2% | 68.6% |
| 3k17A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.54 | 48.0 | 3.55e-01 | 96.5% | 50.0% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 41.0 | 3.80e-01 | 84.2% | 67.1% |
| 1owaA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 45.0 | 3.73e-01 | 100.0% | 85.8% |
| 3tixB03 | 3.40.50.11490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 42.0 | 3.24e-01 | 96.5% | 62.4% |
| 2jbrA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.51 | 42.0 | 3.46e-01 | 100.0% | 63.0% |
| 2hfsA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.50 | 43.0 | 3.25e-01 | 96.5% | 50.0% |
| 3i5pA02 | 1.25.40.440 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain | 0.50 | 32.0 | 3.09e-01 | 82.5% | 51.4% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3590074 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.85 | 75.0 | 5.72e-01 | 96.5% | 52.0% |
| 3781058 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 64.0 | 6.49e-01 | 98.2% | 94.5% |
| 3504507 | 610.3.1.3 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 | 0.76 | 65.0 | 4.52e-01 | 96.5% | 31.4% |
| 1738563 | 610.3.1.3 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 | 0.75 | 65.0 | 4.51e-01 | 96.5% | 31.7% |
| 4271175 | 101.1.2.498 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25870 | 0.75 | 65.0 | 4.99e-01 | 100.0% | 80.7% |
| 3297365 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.75 | 59.0 | 4.19e-01 | 94.7% | 29.0% |
| 1693526 | 2008.1.1.70 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_BsaWI | 0.73 | 62.0 | 3.98e-01 | 96.5% | 22.4% |
| 3814617 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.73 | 49.0 | 4.58e-01 | 70.2% | 64.3% |
| 3800383 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 59.0 | 5.67e-01 | 100.0% | 80.0% |
| 3573598 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.72 | 64.0 | 5.13e-01 | 100.0% | 60.0% |
| 3337658 | 610.3.1.3 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 | 0.71 | 60.0 | 4.22e-01 | 96.5% | 31.4% |
| 3652636 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.71 | 61.0 | 5.48e-01 | 98.2% | 73.8% |
| 3672635 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.71 | 57.0 | 5.32e-01 | 98.2% | 70.7% |
| 2997735 | 149.1.1.0 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 | 0.70 | 61.0 | 3.70e-01 | 100.0% | 67.5% |
| 3247967 | 101.1.1.28 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SWIRM | 0.69 | 57.0 | 5.01e-01 | 94.7% | 60.0% |
| 5025549 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 54.0 | 5.29e-01 | 96.5% | 86.2% |
| 4054265 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.66 | 53.0 | 3.69e-01 | 93.0% | 26.5% |
| 3982775 | 101.1.1.202 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 | 0.66 | 56.0 | 5.57e-01 | 100.0% | 93.3% |
| 5022284 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.65 | 47.0 | 4.33e-01 | 77.2% | 77.3% |
| 5025960 | 101.1.1.558 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF7523 | 0.65 | 54.0 | 5.55e-01 | 96.5% | 100.0% |
| 5004605 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.64 | 43.0 | 4.24e-01 | 75.4% | 65.0% |
| 3928777 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.64 | 53.0 | 4.47e-01 | 100.0% | 61.8% |
| 4516639 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.63 | 41.0 | 4.03e-01 | 70.2% | 60.3% |
| 2674763 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.63 | 47.0 | 4.31e-01 | 80.7% | 62.7% |
| 4026417 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.61 | 46.0 | 4.25e-01 | 84.2% | 62.7% |
| 3898027 | 108.1.1.190 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_13 | 0.61 | 44.0 | 2.78e-01 | 75.4% | 17.1% |
| 4565292 | 109.4.1.1911 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30136 | 0.60 | 47.0 | 3.21e-01 | 91.2% | 29.4% |
| 4978244 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.56 | 42.0 | 3.58e-01 | 94.7% | 46.7% |
| 3883670 | 604.1.1.7 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_plectin_7 | 0.55 | 44.0 | 3.47e-01 | 91.2% | 41.7% |
| 5060140 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.54 | 44.0 | 4.22e-01 | 87.7% | 83.1% |
| 3961347 | 150.5.1.53 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PPE | 0.53 | 46.0 | 4.00e-01 | 96.5% | 63.5% |
| 4981748 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.52 | 45.0 | 4.09e-01 | 93.0% | 77.3% |
| 5016115 | 632.11.1.17 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF1722 | 0.50 | 36.0 | 3.45e-01 | 78.9% | 84.3% |