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k141_307134_prodigal-single.1__X__X__00064
Bact-Virk141_307134_prodigal-single.1__X__X__00064
Identity
- Kingdom:
- phage
Quality
56.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 85-141
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rp5A01 | 2.20.70.70 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.66 | 41.0 | 4.95e-01 | 75.4% | 100.0% |
| 2mm0A00 | 2.10.70.110 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.63 | 44.0 | 4.29e-01 | 96.5% | 67.2% |
| 1ji8A01 | 3.30.1420.10 | Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain | 0.60 | 38.0 | 4.11e-01 | 96.5% | 78.7% |
| 2k7iA01 | 3.30.160.160 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like | 0.60 | 36.0 | 3.81e-01 | 70.2% | 66.7% |
| 1wjqA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 41.0 | 3.78e-01 | 96.5% | 59.0% |
| 3hisA02 | 4.10.470.10 | Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 | 0.54 | 42.0 | 3.88e-01 | 91.2% | 91.4% |
| 3m4rA01 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.54 | 45.0 | 3.18e-01 | 100.0% | 35.3% |
| 3feoB02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 37.0 | 3.36e-01 | 96.5% | 51.8% |
| 2ot9A01 | 3.10.640.10 | Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain | 0.53 | 40.0 | 2.87e-01 | 86.0% | 27.3% |
| 2yrvA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 42.0 | 3.43e-01 | 96.5% | 46.0% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 36.0 | 3.49e-01 | 94.7% | 62.3% |
| 1y7eA02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.52 | 41.0 | 3.44e-01 | 98.2% | 68.6% |
| 3aapA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 42.0 | 3.44e-01 | 100.0% | 100.0% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.51 | 36.0 | 3.72e-01 | 100.0% | 86.5% |
| 3dpuB03 | 3.30.310.200 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.51 | 39.0 | 3.26e-01 | 93.0% | 46.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4188237 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.71 | 41.0 | 4.20e-01 | 71.9% | 60.0% |
| 3936432 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 57.0 | 3.85e-01 | 100.0% | 26.7% |
| 3861438 | 220.1.1.174 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Cybc1_Eros | 0.61 | 43.0 | 3.37e-01 | 75.4% | 35.0% |
| 4077485 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.60 | 37.0 | 3.57e-01 | 73.7% | 52.3% |
| 3550110 | 375.10.1.3 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf_DPOE_2 | 0.60 | 52.0 | 4.79e-01 | 100.0% | 76.0% |
| 4625711 | 570.1.1.1 ↗ | alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind | 0.56 | 38.0 | 3.00e-01 | 71.9% | 41.6% |
| 3230978 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.55 | 37.0 | 3.10e-01 | 75.4% | 38.1% |
| 3389987 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.55 | 32.0 | 3.13e-01 | 70.2% | 49.2% |
| 4349950 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.55 | 34.0 | 3.39e-01 | 73.7% | 58.3% |
| 3400729 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.54 | 31.0 | 2.94e-01 | 70.2% | 44.3% |
| 3932730 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.53 | 46.0 | 2.89e-01 | 98.2% | 32.8% |
| 4992438 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.53 | 45.0 | 3.30e-01 | 100.0% | 52.7% |
| 3924153 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.53 | 30.0 | 3.17e-01 | 71.9% | 58.0% |
| 3413670 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.52 | 31.0 | 3.19e-01 | 100.0% | 61.1% |
| 3165403 | 4958.1.1.0 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit | 0.51 | 31.0 | 3.02e-01 | 71.9% | 49.2% |
| 3411605 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.50 | 30.0 | 3.13e-01 | 70.2% | 61.1% |
D2
medium
residues 163-251
D3
medium
residues 301-376