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k141_307134_prodigal-single.1__X__X__00095
Bact-Virk141_307134_prodigal-single.1__X__X__00095
Identity
- Kingdom:
- phage
Quality
77.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-55
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l9wA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.86 | 61.0 | 4.13e-01 | 78.4% | 23.3% |
| 2i5uA00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.83 | 71.0 | 6.15e-01 | 94.1% | 66.2% |
| 3c3dA02 | 1.10.8.240 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain | 0.82 | 74.0 | 6.14e-01 | 100.0% | 100.0% |
| 1yqgA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.78 | 56.0 | 4.31e-01 | 76.5% | 34.5% |
| 2ahrA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.77 | 55.0 | 4.36e-01 | 76.5% | 36.8% |
| 4ae4A00 | 1.20.120.1920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UBAP1 SOUBA domain | 0.77 | 65.0 | 4.95e-01 | 100.0% | 41.2% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.75 | 63.0 | 5.86e-01 | 100.0% | 94.1% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.74 | 64.0 | 4.02e-01 | 100.0% | 24.2% |
| 3jr7A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.72 | 63.0 | 4.83e-01 | 100.0% | 94.1% |
| 3hh0A01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.72 | 61.0 | 5.42e-01 | 94.1% | 76.4% |
| 1rr7A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 45.0 | 4.64e-01 | 74.5% | 80.4% |
| 3ke6B01 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.66 | 56.0 | 3.72e-01 | 100.0% | 39.4% |
| 3l6gA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.66 | 60.0 | 4.25e-01 | 100.0% | 85.3% |
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.65 | 54.0 | 4.80e-01 | 94.1% | 74.0% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.64 | 55.0 | 4.98e-01 | 100.0% | 79.2% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.64 | 51.0 | 4.96e-01 | 100.0% | 83.3% |
| 2q0yA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 53.0 | 4.01e-01 | 100.0% | 84.1% |
| 1tj7A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.63 | 51.0 | 4.75e-01 | 100.0% | 78.9% |
| 1xwrC00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 45.0 | 4.03e-01 | 78.4% | 71.1% |
| 4i5lB01 | 1.10.238.230 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.63 | 48.0 | 3.95e-01 | 86.3% | 49.0% |
| 2qs7A00 | 3.40.1260.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like | 0.59 | 46.0 | 3.40e-01 | 86.3% | 96.4% |
| 3on2A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 49.0 | 3.42e-01 | 100.0% | 65.3% |
| 2ejqB00 | 3.30.2010.20 | Alpha Beta › 2-Layer Sandwich › Zincin-like › | 0.57 | 46.0 | 3.73e-01 | 100.0% | 54.8% |
| 3dddA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 46.0 | 3.62e-01 | 100.0% | 76.9% |
| 8hk0B03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 46.0 | 3.40e-01 | 98.0% | 87.0% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.52 | 44.0 | 3.84e-01 | 98.0% | 73.2% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5019815 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.88 | 73.0 | 7.75e-01 | 98.0% | 100.0% |
| 4407568 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.88 | 64.0 | 6.02e-01 | 84.3% | 65.0% |
| 3281363 | 191.1.1.1 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 | 0.87 | 63.0 | 4.66e-01 | 80.4% | 32.5% |
| 3603383 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.85 | 76.0 | 6.95e-01 | 100.0% | 75.4% |
| 3328316 | 3721.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 | 0.85 | 57.0 | 5.03e-01 | 72.5% | 50.0% |
| 3286823 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.82 | 59.0 | 4.39e-01 | 76.5% | 32.5% |
| 4298932 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.81 | 56.0 | 5.32e-01 | 74.5% | 61.7% |
| 3483458 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.81 | 58.0 | 4.50e-01 | 76.5% | 36.1% |
| 3188842 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.81 | 58.0 | 4.31e-01 | 76.5% | 31.2% |
| 5033498 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.81 | 71.0 | 7.22e-01 | 96.1% | 98.0% |
| 3960202 | 3721.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 | 0.81 | 55.0 | 4.93e-01 | 70.6% | 51.4% |
| 3685821 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.79 | 57.0 | 4.33e-01 | 76.5% | 33.9% |
| 3881712 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.78 | 56.0 | 4.09e-01 | 76.5% | 28.9% |
| 53250 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.78 | 56.0 | 4.34e-01 | 76.5% | 35.1% |
| 5055210 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.78 | 67.0 | 6.24e-01 | 100.0% | 84.6% |
| 3608559 | 3721.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 | 0.78 | 54.0 | 4.81e-01 | 72.5% | 52.9% |
| 3279199 | 3721.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 | 0.76 | 52.0 | 4.68e-01 | 70.6% | 51.4% |
| 4426344 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.76 | 53.0 | 4.86e-01 | 76.5% | 55.9% |
| 5015839 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.75 | 64.0 | 5.87e-01 | 100.0% | 78.6% |
| 3587414 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.75 | 53.0 | 4.22e-01 | 76.5% | 37.1% |
| 4976851 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.75 | 64.0 | 5.83e-01 | 100.0% | 78.6% |
| 3966878 | 3721.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 | 0.74 | 52.0 | 4.67e-01 | 72.5% | 52.9% |
| 4947265 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.74 | 62.0 | 5.72e-01 | 100.0% | 78.6% |
| 5076000 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.73 | 62.0 | 5.67e-01 | 100.0% | 78.6% |
| 5003875 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.73 | 60.0 | 5.68e-01 | 98.0% | 92.3% |
| 4992927 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.73 | 61.0 | 5.60e-01 | 98.0% | 85.7% |
| 4216342 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.72 | 62.0 | 5.54e-01 | 100.0% | 77.3% |
| 1937178 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.72 | 63.0 | 4.47e-01 | 100.0% | 95.5% |
| 2512953 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.71 | 57.0 | 5.62e-01 | 100.0% | 84.2% |
| 4985470 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.71 | 59.0 | 5.48e-01 | 100.0% | 78.6% |
| 5034808 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.70 | 58.0 | 5.38e-01 | 98.0% | 85.7% |
| 5082367 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.70 | 59.0 | 5.51e-01 | 98.0% | 83.1% |
| 5001051 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.69 | 56.0 | 5.36e-01 | 96.1% | 98.3% |
| 4960785 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.68 | 56.0 | 5.21e-01 | 100.0% | 78.6% |
| 4999074 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.65 | 54.0 | 4.88e-01 | 100.0% | 80.0% |
| 3203055 | 2003.6.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like | 0.63 | 53.0 | 3.48e-01 | 100.0% | 82.3% |
| 3610001 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 53.0 | 4.50e-01 | 100.0% | 80.0% |
| 3525462 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.59 | 49.0 | 3.99e-01 | 100.0% | 55.5% |
| 4982080 | 4126.1.1.1 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA | 0.56 | 43.0 | 3.07e-01 | 92.2% | 55.8% |
| 3346014 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.55 | 48.0 | 3.03e-01 | 100.0% | 78.6% |
| 4301883 | 309.1.1.20 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C, M16C_assoc, PreP_C | 0.54 | 44.0 | 2.40e-01 | 98.0% | 42.4% |
| 3689081 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.53 | 44.0 | 4.11e-01 | 98.0% | 89.2% |