←Back to structures
k141_307134_prodigal-single.1__X__X__00156
Bact-Virk141_307134_prodigal-single.1__X__X__00156
Identity
- Kingdom:
- phage
Quality
81.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 64-159
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.73 | 42.0 | 5.33e-01 | 100.0% | 98.2% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.70 | 44.0 | 5.28e-01 | 100.0% | 98.4% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.69 | 47.0 | 3.95e-01 | 100.0% | 42.6% |
| 4n4rB00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.65 | 48.0 | 4.08e-01 | 77.1% | 58.3% |
| 2r76A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.63 | 47.0 | 4.17e-01 | 77.1% | 64.4% |
| 1pbyB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 54.0 | 3.76e-01 | 97.9% | 41.8% |
| 5tseA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.61 | 47.0 | 4.17e-01 | 95.8% | 58.1% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.59 | 47.0 | 4.16e-01 | 94.8% | 59.1% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 38.0 | 4.15e-01 | 97.9% | 81.6% |
| 1jmxB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 51.0 | 3.51e-01 | 95.8% | 41.6% |
| 3pcrA01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.59 | 37.0 | 3.75e-01 | 76.0% | 63.8% |
| 5x7qA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.57 | 47.0 | 3.59e-01 | 100.0% | 38.1% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.57 | 42.0 | 3.16e-01 | 88.5% | 31.8% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.56 | 48.0 | 3.93e-01 | 100.0% | 51.7% |
| 1cruA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.56 | 48.0 | 3.19e-01 | 99.0% | 45.5% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 49.0 | 4.25e-01 | 99.0% | 70.8% |
| 1pfoA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.55 | 31.0 | 3.78e-01 | 82.3% | 96.2% |
| 1idpA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 48.0 | 4.22e-01 | 99.0% | 83.7% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 47.0 | 3.37e-01 | 96.9% | 76.7% |
| 7pkwA01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 40.0 | 3.97e-01 | 97.9% | 73.8% |
| 2chcC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 47.0 | 4.01e-01 | 97.9% | 64.8% |
| 4gb5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 47.0 | 4.14e-01 | 100.0% | 78.4% |
| 2rkcA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.53 | 46.0 | 3.05e-01 | 94.8% | 37.3% |
| 6nu7A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 47.0 | 3.28e-01 | 100.0% | 72.6% |
| 6mlyB01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 46.0 | 3.41e-01 | 97.9% | 58.8% |
| 3qeeB00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 45.0 | 3.20e-01 | 94.8% | 45.5% |
| 5ig0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 46.0 | 4.18e-01 | 100.0% | 82.4% |
| 3ef8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 45.0 | 3.99e-01 | 99.0% | 72.3% |
| 4ph8A00 | 2.60.40.2910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 43.0 | 3.77e-01 | 91.7% | 90.0% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 46.0 | 3.82e-01 | 100.0% | 75.1% |
| 4l8oA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 45.0 | 3.87e-01 | 100.0% | 67.1% |
| 3a76A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 45.0 | 4.06e-01 | 100.0% | 79.1% |
| 1lkfA00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.52 | 41.0 | 3.01e-01 | 88.5% | 92.1% |
| 3zxjA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 45.0 | 3.15e-01 | 95.8% | 90.7% |
| 4lzkA00 | 2.60.40.3910 | Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein | 0.51 | 39.0 | 3.40e-01 | 84.4% | 94.3% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 44.0 | 4.06e-01 | 99.0% | 82.0% |
| 4afkA00 | 2.40.160.100 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 43.0 | 2.81e-01 | 92.7% | 40.5% |
| 4ojdH01 | 2.60.98.60 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 | 0.51 | 42.0 | 3.54e-01 | 93.8% | 53.0% |
| 8f5pC01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 45.0 | 3.21e-01 | 99.0% | 43.7% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.50 | 45.0 | 3.31e-01 | 100.0% | 92.8% |
| 2f86B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 42.0 | 3.95e-01 | 99.0% | 82.9% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4998370 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.76 | 48.0 | 3.49e-01 | 100.0% | 25.8% |
| 4025861 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.70 | 48.0 | 3.94e-01 | 100.0% | 40.0% |
| 5022923 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.69 | 46.0 | 4.87e-01 | 91.7% | 76.5% |
| None | — | 0.67 | 38.0 | 3.47e-01 | 87.5% | 41.5% | |
| 2337265 | 12.3.1.33 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › PcRGLX_2nd | 0.67 | 60.0 | 4.03e-01 | 100.0% | 31.7% |
| 3648159 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.66 | 42.0 | 3.79e-01 | 90.6% | 47.7% |
| 4183697 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.65 | 41.0 | 3.52e-01 | 90.6% | 40.0% |
| 3616330 | 77.3.1.4 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 | 0.63 | 36.0 | 3.21e-01 | 96.9% | 40.0% |
| 5013600 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.63 | 52.0 | 4.69e-01 | 100.0% | 66.2% |
| 3718042 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.61 | 52.0 | 3.46e-01 | 97.9% | 34.0% |
| 3264178 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.60 | 40.0 | 3.53e-01 | 91.7% | 46.4% |
| 3645007 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.60 | 46.0 | 4.85e-01 | 90.6% | 95.3% |
| 3638345 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 50.0 | 3.32e-01 | 95.8% | 42.2% |
| 5060223 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.58 | 40.0 | 3.15e-01 | 84.4% | 32.7% |
| 2712795 | 7503.1.1.20 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF7499 | 0.57 | 51.0 | 4.15e-01 | 97.9% | 62.2% |
| 3707878 | 5.1.2.33 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 | 0.57 | 47.0 | 3.45e-01 | 93.8% | 42.9% |
| 5011691 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 47.0 | 4.42e-01 | 91.7% | 75.7% |
| 6407 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.56 | 49.0 | 4.26e-01 | 99.0% | 71.2% |
| 3833207 | 5.1.4.319 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st | 0.55 | 47.0 | 3.03e-01 | 94.8% | 27.8% |
| 3387833 | 7503.1.1.7 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LpoB | 0.55 | 48.0 | 4.01e-01 | 94.8% | 74.4% |
| 6402 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.55 | 47.0 | 3.98e-01 | 96.9% | 62.3% |
| 3823661 | 5.1.5.96 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 | 0.54 | 48.0 | 3.46e-01 | 100.0% | 63.4% |
| 3963916 | 7503.1.1.6 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › GNA1162-like | 0.54 | 48.0 | 3.86e-01 | 96.9% | 59.5% |
| 4457744 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.54 | 43.0 | 3.03e-01 | 87.5% | 73.4% |
| 3873771 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.54 | 40.0 | 3.90e-01 | 97.9% | 70.0% |
| 6519 | 265.1.1.1 ↗ | a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat | 0.53 | 38.0 | 3.53e-01 | 89.6% | 58.5% |
| 5033003 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 45.0 | 3.90e-01 | 90.6% | 73.8% |
| 3912315 | 5.1.4.371 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Frtz | 0.53 | 45.0 | 2.98e-01 | 96.9% | 29.2% |
| 3717566 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.53 | 45.0 | 3.37e-01 | 97.9% | 81.4% |
| 3961200 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.53 | 46.0 | 4.13e-01 | 96.9% | 73.3% |
| 3796297 | 3369.1.1.0 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 | 0.52 | 46.0 | 3.64e-01 | 95.8% | 47.7% |
| 5028178 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.52 | 43.0 | 3.46e-01 | 92.7% | 63.4% |
| 5026087 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.52 | 45.0 | 2.94e-01 | 95.8% | 37.1% |
| 3631673 | 222.1.1.27 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 | 0.52 | 46.0 | 3.77e-01 | 99.0% | 93.9% |
| 5003871 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.52 | 45.0 | 4.05e-01 | 100.0% | 82.9% |
| 2632036 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.52 | 44.0 | 3.98e-01 | 97.9% | 78.3% |
| 4472109 | 243.1.1.103 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF30257 | 0.51 | 44.0 | 4.12e-01 | 99.0% | 76.7% |
| 4104949 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 44.0 | 4.28e-01 | 92.7% | 99.0% |
| 3281242 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.51 | 44.0 | 4.02e-01 | 100.0% | 82.3% |
D2
medium
residues 7-63
Domain cluster:
representative