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large_T-antigen

Euk-Vir

Erythrura_gouldiae_polyomavirus_1

large_T-antigen__YP_009508818__Erythrura_gouldiae_polyomavirus_1__2169903

Identity

Accession:: YP_009508818 ↗
Protein ID:: large_T-antigen
Kingdom:: euk

Quality

80.9 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Sepolyvirales› Polyomaviridae› Gammapolyomavirus› Erythrura_gouldiae_polyomavirus_1

TaxID: 2169903

Cluster

View cluster (129 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-57

PDB

Domain cluster: rep: PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00019__D3-53

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00226.37 best	DnaJ	44.3	2.10e-11	87.3%	69.8%

D2 high residues 147-255

PDB

Domain cluster: rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D167-268

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02217.23 best	T_Ag_DNA_bind	111.0	4.90e-32	81.7%	93.6%

D3 high residues 269-365

PDB

Domain cluster: rep: ORF01L__YP_009252373__Marbled_eel_polyomavirus__1662286__D415-505

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	41.5	1.10e-10	100.0%	19.7%

D4 medium residues 366-407_560-631

PDB

Domain cluster: rep: putative_large_T_antigen__YP_529828__Crow_polyomavirus__349563__D368-405_561-631

D5 medium residues 408-489

PDB

Domain cluster: rep: large_T_antigen__YP_010087549__Deltapolyomavirus_canis__2170403__D484-543

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	85.4	5.50e-24	100.0%	18.0%
PF01057.24	Parvo_NS1	20.7	2.60e-04	95.1%	14.4%

D6 medium residues 490-559

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	84.2	1.30e-23	97.1%	15.3%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1svmA03	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.94	89.0	6.58e-01	98.6%	45.8%
1tueD00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.78	65.0	4.58e-01	90.0%	33.2%
5x9vA01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.57	46.0	3.28e-01	94.3%	95.9%
1grlB01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.56	45.0	3.25e-01	95.7%	95.1%
6ks6Z01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.55	44.0	3.08e-01	94.3%	90.3%
6ks6q01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.54	43.0	2.99e-01	92.9%	87.5%
5lohA02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.53	37.0	2.88e-01	74.3%	88.6%
6ks6a01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.53	42.0	2.97e-01	94.3%	88.1%
1qhdA02	1.10.1350.10	Mainly Alpha › Orthogonal Bundle › Viral capsid alpha domain › Viral capsid alpha domain	0.53	38.0	2.77e-01	78.6%	100.0%
6hj2A00	1.10.565.10	Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor	0.51	40.0	2.78e-01	91.4%	85.4%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2482197	2004.1.1.142 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Polyoma_lg_T_C	0.94	86.0	6.70e-01	95.7%	51.9%
2033706	7592.1.1.5 ↗	a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csx1_CARF	0.54	39.0	2.64e-01	78.6%	56.2%
3517388	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.54	43.0	3.23e-01	91.4%	39.0%
119334	4949.1.1.2 ↗	alpha complex topology › PsV capsid protein › PsV capsid protein › PsV capsid protein › PsV_CP_C	0.54	41.0	2.68e-01	87.1%	66.2%
3603411	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.52	41.0	3.35e-01	87.1%	49.6%
3810292	3792.1.1.2 ↗	beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd	0.51	32.0	3.17e-01	100.0%	58.7%
4140340	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.51	39.0	3.16e-01	87.1%	42.7%