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large_T_antigen

Euk-Vir

Squirrel_monkey_polyomavirus

large_T_antigen__YP_001531349__Squirrel_monkey_polyomavirus__452475

Identity

Accession:: YP_001531349 ↗
Protein ID:: large_T_antigen
Kingdom:: euk

Quality

85.1 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Sepolyvirales› Polyomaviridae› Betapolyomavirus› Squirrel_monkey_polyomavirus

TaxID: 452475

Cluster

View cluster (129 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-68

PDB

Domain cluster: rep: small_T_antigen__YP_007346980__Betapolyomavirus_ptedavyi__1891773__D7-77

D2 high residues 154-267

PDB

Domain cluster: rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D167-268

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02217.23 best	T_Ag_DNA_bind	109.7	1.20e-31	75.4%	90.4%

D3 high residues 279-363

PDB

Domain cluster: rep: ORF01L__YP_009252373__Marbled_eel_polyomavirus__1662286__D415-505

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	109.6	2.50e-31	100.0%	20.1%

D4 medium residues 404-463

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	84.7	9.30e-24	100.0%	13.7%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3khkB01	1.20.1260.30	Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain	0.51	37.0	2.88e-01	83.3%	83.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3471764	101.1.1.10 ↗	alpha arrays › HTH › HTH › Three-helical HTH › ARID	0.55	42.0	3.64e-01	86.7%	88.0%

D5 medium residues 464-559

PDB

Domain cluster: rep: large_T_antigen__YP_009091977__Sea_otter_polyomavirus_1__1552409__D447-492_518-542

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	153.5	1.20e-44	100.0%	22.8%

D6 medium residues 560-638

PDB

Domain cluster: rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D403-422_572-647

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	58.0	1.10e-15	100.0%	18.2%