large_T_antigen

Euk-Vir

Betapolyomavirus_ptedavyi

large_T_antigen__YP_007346979__Betapolyomavirus_ptedavyi__1891773

Identity

83.9 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Sepolyvirales› Polyomaviridae› Betapolyomavirus› Betapolyomavirus_ptedavyi

TaxID: 1891773

View cluster (129 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 143-257

PDB

Domain cluster: rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D167-268

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02217.23 best	T_Ag_DNA_bind	105.2	3.30e-30	79.1%	94.7%

D2 high residues 275-359

PDB

Domain cluster: rep: ORF01L__YP_009252373__Marbled_eel_polyomavirus__1662286__D415-505

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	110.5	1.30e-31	100.0%	20.1%

D3 medium residues 1-68

PDB

Domain cluster: rep: small_T_antigen__YP_007346980__Betapolyomavirus_ptedavyi__1891773__D7-77

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00226.37 best	DnaJ	28.4	2.00e-06	82.3%	63.5%

D4 medium residues 386-403_554-631

PDB

Domain cluster: rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D403-422_572-647

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	69.8	2.90e-19	82.3%	18.7%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1svmA02	1.20.1050.70	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Large T antigen, SV40, domain 3	0.98	92.0	8.46e-01	99.0%	78.8%
3lvyE01	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.62	53.0	4.50e-01	95.8%	67.9%
6l3tA01	1.20.1440.80	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain	0.56	42.0	3.43e-01	83.3%	57.8%
4wjg400	1.20.1260.80	Mainly Alpha › Up-down Bundle › Ferritin ›	0.54	43.0	3.21e-01	88.5%	74.3%
3tuiA00	1.10.3720.10	Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like	0.52	38.0	2.97e-01	77.1%	69.4%
1z72A00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.52	41.0	3.20e-01	86.5%	91.7%
1miwA03	1.20.58.560	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	38.0	3.80e-01	84.4%	77.0%
4c0nA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.50	36.0	3.21e-01	82.3%	49.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3455048	611.9.1.4 ↗	alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N	0.54	44.0	3.96e-01	92.7%	76.6%
3396797	601.1.1.43 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Serendipity_A	0.52	37.0	3.59e-01	89.6%	66.4%

D5 medium residues 404-553

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	271.3	2.00e-80	100.0%	35.5%
PF00519.24	PPV_E1_C	28.2	1.50e-06	96.0%	39.8%