large_T_antigen

Euk-Vir

Pan_troglodytes_verus_polyomavirus_1a

large_T_antigen__YP_009094187__Pan_troglodytes_verus_polyomavirus_1a__928211

Identity

74.6 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Sepolyvirales› Polyomaviridae› Alphapolyomavirus› Pan_troglodytes_verus_polyomavirus_1a

TaxID: 928211

View cluster (129 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 320-416

PDB

Domain cluster: rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D167-268

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02217.23 best	T_Ag_DNA_bind	92.9	2.20e-26	79.4%	81.9%

D2 high residues 433-516

PDB

Domain cluster: rep: ORF01L__YP_009252373__Marbled_eel_polyomavirus__1662286__D415-505

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	80.4	1.90e-22	100.0%	20.1%

D3 high residues 556-707

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	194.4	4.60e-57	99.3%	33.8%
PF00519.24	PPV_E1_C	38.7	9.50e-10	96.7%	37.7%

D4 medium residues 1-73

PDB

Domain cluster: rep: small_T_antigen__YP_007346980__Betapolyomavirus_ptedavyi__1891773__D7-77

D5 medium residues 731-787

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	29.5	5.10e-07	98.2%	12.2%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1svmA02	1.20.1050.70	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Large T antigen, SV40, domain 3	0.99	90.0	6.76e-01	94.7%	45.8%
3q9oA02	3.90.1350.10	Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain	0.55	46.0	3.41e-01	100.0%	64.1%
4efcA01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.54	39.0	3.24e-01	84.2%	82.6%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4933518	5065.1.1.1 ↗	alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3	0.52	40.0	2.64e-01	87.7%	56.7%
3489329	109.4.1.1164 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › zf-MYND	0.52	43.0	2.89e-01	98.2%	29.8%
5083422	1075.1.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain	0.51	39.0	2.82e-01	96.5%	81.4%