←Back to structures

large_T_antigen

Euk-Vir

Philantomba_monticola_polyomavirus_1

large_T_antigen__YP_009553187__Philantomba_monticola_polyomavirus_1__2170411

Identity

Accession:: YP_009553187 ↗
Protein ID:: large_T_antigen
Kingdom:: euk

Quality

79.4 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Sepolyvirales› Polyomaviridae› Alphapolyomavirus› Philantomba_monticola_polyomavirus_1

TaxID: 2170411

Cluster

View cluster (129 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-68

PDB

Domain cluster: rep: small_T_antigen__YP_007346980__Betapolyomavirus_ptedavyi__1891773__D7-77

D2 high residues 232-342

PDB

Domain cluster: rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D167-268

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02217.23 best	T_Ag_DNA_bind	103.5	1.10e-29	75.7%	90.4%

D3 high residues 352-434

PDB

Domain cluster: rep: ORF01L__YP_009252373__Marbled_eel_polyomavirus__1662286__D415-505

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	64.7	1.00e-17	98.8%	19.4%

D4 medium residues 436-450_495-593

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	144.3	7.30e-42	97.4%	24.0%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1svmA03	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.89	82.0	7.21e-01	98.2%	70.6%
6xigA01	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.59	41.0	3.08e-01	72.8%	95.0%
4asvA00	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.50	26.0	3.15e-01	88.6%	73.4%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2482197	2004.1.1.142 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Polyoma_lg_T_C	0.96	81.0	7.67e-01	86.8%	75.6%
3474509	2004.1.1.57 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Parvo_NS1	0.66	60.0	5.20e-01	97.4%	88.8%
4890930	148.1.3.397 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Dynein_C	0.63	55.0	4.62e-01	93.9%	84.1%
3961108	2004.1.1.155 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_3	0.62	50.0	4.79e-01	86.8%	74.6%
4986568	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.61	56.0	4.28e-01	100.0%	76.4%
3609835	2004.1.1.211 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P	0.56	46.0	3.59e-01	87.7%	78.8%
3833268	2004.1.1.24 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C	0.55	41.0	2.60e-01	78.1%	35.6%
4498368	2002.1.1.28 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRAI	0.55	40.0	3.39e-01	77.2%	100.0%
4162553	2004.1.1.211 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P	0.54	44.0	3.54e-01	87.7%	64.5%
5016262	2003.1.1.123 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DUF166	0.53	36.0	3.33e-01	87.7%	54.5%

D5 medium residues 451-494_594-713

PDB

Domain cluster: rep: large_T_antigen__YP_007195293__Alphapolyomavirus_septipanos__1891739__D391-454_582-665

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	102.2	4.50e-29	73.8%	27.6%