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large_T_antigen

Euk-Vir

Panthera_leo_polyomavirus_1

large_T_antigen__YP_009553612__Panthera_leo_polyomavirus_1__2170405

Identity

Accession:
YP_009553612 ↗
Protein ID:
large_T_antigen
Kingdom:
euk

Quality

83.8 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Sepolyvirales› Polyomaviridae› Betapolyomavirus› Panthera_leo_polyomavirus_1

TaxID: 2170405

Cluster

View cluster (129 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-64
PDB
Domain cluster: rep: small_T_antigen__YP_007346980__Betapolyomavirus_ptedavyi__1891773__D7-77
D2 high residues 160-261
PDB
Domain cluster: rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D167-268
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02217.23 best T_Ag_DNA_bind 94.8 5.50e-27 83.3% 90.4%
D3 medium residues 284-298_314-356
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06431.17 best Polyoma_lg_T_C 49.1 5.90e-13 100.0% 11.5%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1svmA01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.98 93.0 7.80e-01 100.0% 81.1%
1r5aA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 37.0 2.99e-01 96.6% 36.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3994267 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.50 37.0 2.39e-01 84.5% 94.6%
D4 medium residues 371-415_566-644
PDB
Domain cluster: rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D403-422_572-647
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF06431.17 best Polyoma_lg_T_C 49.4 4.60e-13 64.5% 17.3%
PF06431.17 Polyoma_lg_T_C 41.0 1.60e-10 44.4% 10.8%
D5 medium residues 416-565
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06431.17 best Polyoma_lg_T_C 260.1 5.00e-77 100.0% 34.8%