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large_subunit_mRNA_capping_enzyme

Euk-Vir

Pteropox_virus

large_subunit_mRNA_capping_enzyme__YP_009268797__Pteropox_virus__1873698

Identity

Accession:: YP_009268797 ↗
Protein ID:: large_subunit_mRNA_capping_enzyme
Kingdom:: euk

Quality

87.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Pteropopoxvirus› Pteropox_virus

TaxID: 1873698

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 240-396

PDB

Domain cluster: rep: Salt_Pond_R1_B_H2O_MG_scaffold_1_prodigal-single.1__X__X__00295__D161-347

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21004.4 best	MCEL_GT_NTPase	137.5	2.10e-40	65.0%	88.5%

D2 high residues 402-531

PDB

Domain cluster: rep: putative_D1R_protein__YP_010085774__Orthopoxvirus_Abatino__2478919__D399-522

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21005.5 best	OB_MCEL_GT	204.1	1.30e-60	100.0%	94.2%

D3 high residues 595-716_768-786

PDB

Domain cluster: rep: IMGVR_UViG_3300009616_000257-3300009616-Ga0116111_100275611__D486-632

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03291.23 best	mRNA_G-N7_MeTrfase	44.5	1.60e-11	99.3%	37.5%

D4 medium residues 33-59_188-221

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10640.15 best	MCEL_TPase	28.6	1.30e-06	44.3%	12.6%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ffsA00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.61	50.0	3.90e-01	93.4%	93.1%
7qh2C03	3.30.70.2740	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.60	49.0	4.64e-01	100.0%	97.4%
4hjhA04	3.30.310.50	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain	0.60	49.0	4.33e-01	100.0%	97.0%
1vjhA00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.58	48.0	3.99e-01	100.0%	94.2%
5ja2A01	3.30.559.30	Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain	0.57	47.0	3.19e-01	96.7%	73.2%
2m89A00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.56	46.0	3.74e-01	98.4%	94.8%
2qybA00	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.56	39.0	3.05e-01	77.0%	92.1%
2h21A02	3.90.1420.10	Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain	0.54	38.0	2.78e-01	73.8%	58.2%
2ns6A00	3.30.930.30	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 ›	0.51	40.0	2.93e-01	88.5%	64.5%
2pnqA00	3.60.40.10	Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain	0.51	42.0	2.65e-01	98.4%	64.4%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3265799	304.19.1.3 ↗	a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › PF30773	0.63	52.0	4.83e-01	96.7%	90.0%
3993350	630.1.1.1 ↗	a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind	0.57	43.0	3.47e-01	98.4%	37.9%
4298034	323.1.1.5 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation	0.57	46.0	3.22e-01	98.4%	79.2%
3495526	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.56	47.0	2.90e-01	93.4%	26.5%
5030332	324.1.1.1 ↗	a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC	0.54	37.0	2.66e-01	70.5%	53.1%
4309316	3016.1.1.19 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C	0.54	43.0	4.08e-01	91.8%	74.7%
4989090	324.1.1.1 ↗	a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC	0.54	41.0	3.15e-01	83.6%	62.1%
3702755	295.1.1.0 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain	0.53	37.0	3.82e-01	93.4%	83.6%
5047189	304.56.1.0 ↗	a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like	0.52	43.0	3.95e-01	98.4%	78.8%
3735388	304.103.1.1 ↗	a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase	0.52	37.0	2.65e-01	77.0%	50.0%
3763071	7558.1.1.6 ↗	a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransf_C	0.51	44.0	3.15e-01	100.0%	95.5%
3838973	885.1.1.1 ↗	a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N	0.51	43.0	3.42e-01	95.1%	93.1%
4641056	885.1.1.1 ↗	a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N	0.51	42.0	3.39e-01	93.4%	94.4%
3786083	207.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats	0.51	39.0	2.38e-01	85.2%	15.5%

D5 medium residues 60-187

PDB

Domain cluster: rep: mRNA_capping_enzyme_large_subunit__YP_010085378__Eastern_grey_kangaroopox_virus__2042482__D72-123_138-160_176-203

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10640.15 best	MCEL_TPase	195.6	9.00e-58	100.0%	64.1%

D6 medium residues 717-767

PDB

Domain cluster: rep: mRNA_capping_enzyme_large_subunit__YP_784299__Nile_crocodilepox_virus__1285600__D719-769