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large_t_antigen
Euk-VirSorex_araneus_polyomavirus_1
large_t_antigen__YP_010084741__Sorex_araneus_polyomavirus_1__2560769
Identity
- Accession:
- YP_010084741 ↗
- Protein ID:
- large_t_antigen
- Kingdom:
- euk
Quality
79.8
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Sepolyvirales›
Polyomaviridae›
Alphapolyomavirus›
Sorex_araneus_polyomavirus_1
TaxID: 2560769
Cluster
View cluster (129 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-69
Domain cluster:
rep: small_T_antigen__YP_007346980__Betapolyomavirus_ptedavyi__1891773__D7-77
D2
high
residues 221-338
Domain cluster:
rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D167-268
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02217.23 best | T_Ag_DNA_bind | 110.6 | 6.70e-32 | 78.0% | 93.6% |
D3
high
residues 348-431
Domain cluster:
rep: ORF01L__YP_009252373__Marbled_eel_polyomavirus__1662286__D415-505
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06431.17 best | Polyoma_lg_T_C | 77.2 | 1.70e-21 | 100.0% | 19.7% |
D4
medium
residues 433-445_509-595
Domain cluster:
rep: large_T_antigen__YP_009553187__Philantomba_monticola_polyomavirus_1__2170411__D436-450_495-593
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06431.17 best | Polyoma_lg_T_C | 125.6 | 3.40e-36 | 93.0% | 21.1% |
D5
medium
residues 446-508_596-708
Domain cluster:
rep: large_T_antigen__YP_007195293__Alphapolyomavirus_septipanos__1891739__D391-454_582-665
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06431.17 best | Polyoma_lg_T_C | 56.2 | 3.90e-15 | 65.3% | 26.6% |
| PF06431.17 | Polyoma_lg_T_C | 44.8 | 1.20e-11 | 33.5% | 12.2% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1svmA02 | 1.20.1050.70 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Large T antigen, SV40, domain 3 | 0.91 | 54.0 | 6.69e-01 | 94.9% | 89.0% |
| 1u0jA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 40.0 | 3.88e-01 | 72.7% | 91.3% |