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late_expression_factor_1
Euk-VirMalacosoma_neustria_nucleopolyhedrovirus
late_expression_factor_1__YP_009552265__Malacosoma_neustria_nucleopolyhedrovirus__38012
Identity
- Accession:
- YP_009552265 ↗
- Protein ID:
- late_expression_factor_1
- Kingdom:
- euk
Quality
88.1
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Malacosoma_neustria_nucleopolyhedrovirus
TaxID: 38012
Cluster
View cluster (46 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-71_212-231
Domain cluster:
rep: IMGVR_UViG_3300025073_001004-3300025073-Ga0208245_100042257__D1-82_170-181
D2
high
residues 84-113_130-209
Domain cluster:
rep: LEF-1__YP_009552675__Operophtera_brumata_nucleopolyhedrovirus__1046267__D79-105_127-201
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bpuC00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.76 | 70.0 | 4.79e-01 | 100.0% | 51.5% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 48.0 | 3.26e-01 | 99.1% | 44.9% |
| 4rm7A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.53 | 38.0 | 3.73e-01 | 96.4% | 67.2% |
| 1jqkA03 | 1.20.1270.30 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.50 | 34.0 | 2.99e-01 | 70.0% | 64.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3303359 | 706.1.1.3 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GIL1_IRKI_C | 0.61 | 53.0 | 4.62e-01 | 97.3% | 65.9% |
| 3509165 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.59 | 32.0 | 3.47e-01 | 91.8% | 60.0% |
| 3660838 | 3121.1.1.12 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › GIL1_IRKI_C | 0.57 | 50.0 | 3.57e-01 | 100.0% | 44.4% |
| 4948173 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 44.0 | 3.02e-01 | 85.5% | 50.0% |
| 3977796 | 186.1.1.15 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Int_N | 0.51 | 37.0 | 3.66e-01 | 100.0% | 72.2% |
| 4936930 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.51 | 43.0 | 3.65e-01 | 93.6% | 77.4% |
| 3264751 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.50 | 35.0 | 3.26e-01 | 72.7% | 76.6% |