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late_expression_factor_1
Euk-VirNeodiprion_sertifer_nucleopolyhedrovirus
late_expression_factor_1__YP_025175__Neodiprion_sertifer_nucleopolyhedrovirus__111874
Identity
- Accession:
- YP_025175 ↗
- Protein ID:
- late_expression_factor_1
- Kingdom:
- euk
Quality
75.8
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Gammabaculovirus›
Neodiprion_sertifer_nucleopolyhedrovirus
TaxID: 111874
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 20-94_157-190
Domain cluster:
representative
CATH (53)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5of3A00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.79 | 72.0 | 5.07e-01 | 99.1% | 59.2% |
| 4limA00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.79 | 72.0 | 4.88e-01 | 100.0% | 88.7% |
| 2faoA01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.74 | 68.0 | 4.99e-01 | 100.0% | 59.2% |
| 1g71A01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.74 | 67.0 | 5.19e-01 | 99.1% | 53.8% |
| 1s2oA02 | 3.90.1070.10 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.71 | 33.0 | 3.95e-01 | 92.7% | 64.8% |
| 2iruA02 | 3.30.70.3300 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 64.0 | 5.90e-01 | 98.2% | 92.0% |
| 4ofzA03 | 3.30.70.3080 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 36.0 | 3.96e-01 | 74.3% | 61.8% |
| 3h20A02 | 3.30.70.1790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RepB DNA-primase, N-terminal domain | 0.65 | 55.0 | 5.67e-01 | 96.3% | 97.1% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.64 | 58.0 | 4.94e-01 | 100.0% | 61.4% |
| 2e29A01 | 3.30.70.2280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 43.0 | 4.95e-01 | 78.0% | 100.0% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.62 | 55.0 | 4.28e-01 | 98.2% | 77.0% |
| 3aqpA02 | 3.30.70.3220 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 46.0 | 4.04e-01 | 78.0% | 100.0% |
| 3aqoA01 | 3.30.70.3400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 44.0 | 4.98e-01 | 75.2% | 100.0% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.60 | 42.0 | 4.71e-01 | 72.5% | 91.8% |
| 5xamA02 | 3.30.70.3220 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 42.0 | 3.74e-01 | 72.5% | 100.0% |
| 5llwA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.60 | 46.0 | 4.30e-01 | 81.7% | 81.8% |
| 1ybtB00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.60 | 44.0 | 3.82e-01 | 78.0% | 86.6% |
| 4i68A00 | 3.30.70.1800 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 43.0 | 4.70e-01 | 96.3% | 93.3% |
| 1j27A00 | 3.30.70.1120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like | 0.59 | 44.0 | 4.60e-01 | 78.0% | 92.9% |
| 1vbkA01 | 3.30.70.1510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like | 0.59 | 43.0 | 4.76e-01 | 80.7% | 98.8% |
| 4oi3A00 | 3.30.70.3090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer | 0.58 | 42.0 | 4.71e-01 | 78.9% | 100.0% |
| 1azsA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.58 | 43.0 | 3.64e-01 | 78.0% | 77.4% |
| 2kkhA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 38.0 | 4.39e-01 | 75.2% | 96.0% |
| 2gukA00 | 3.30.2190.10 | Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like | 0.58 | 33.0 | 3.34e-01 | 82.6% | 54.1% |
| 1tuwA00 | 3.30.70.1090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. | 0.58 | 43.0 | 4.37e-01 | 78.9% | 93.4% |
| 1qm9A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 48.0 | 5.01e-01 | 95.4% | 100.0% |
| 5yjlB01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.57 | 49.0 | 4.38e-01 | 96.3% | 83.9% |
| 1gpjA01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.57 | 49.0 | 4.54e-01 | 96.3% | 82.8% |
| 1m1hA01 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.57 | 46.0 | 4.81e-01 | 89.0% | 96.0% |
| 2xhcA01 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.57 | 44.0 | 4.72e-01 | 91.7% | 95.8% |
| 1gmnA01 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.57 | 37.0 | 4.10e-01 | 96.3% | 83.0% |
| 2fphX02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 43.0 | 4.72e-01 | 92.7% | 98.9% |
| 2ifxA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 42.0 | 4.59e-01 | 78.0% | 100.0% |
| 2jnaA01 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.57 | 31.0 | 3.71e-01 | 94.5% | 82.6% |
| 1r89A03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.57 | 50.0 | 4.68e-01 | 98.2% | 91.8% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 36.0 | 3.98e-01 | 78.0% | 81.2% |
| 2wbmA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 36.0 | 4.23e-01 | 78.9% | 100.0% |
| 1lq9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 43.0 | 4.31e-01 | 81.7% | 93.8% |
| 5o6uB00 | 3.30.70.2540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 | 0.56 | 48.0 | 4.03e-01 | 93.6% | 97.3% |
| 1kn6A00 | 3.30.70.850 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8, pro-domain | 0.55 | 36.0 | 4.27e-01 | 77.1% | 100.0% |
| 2g47A03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 46.0 | 3.66e-01 | 91.7% | 91.2% |
| 1z1dB00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.55 | 50.0 | 4.72e-01 | 100.0% | 85.5% |
| 4mt1A02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.55 | 48.0 | 4.90e-01 | 96.3% | 100.0% |
| 5t0oA02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.55 | 47.0 | 4.90e-01 | 96.3% | 100.0% |
| 1q8bA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 41.0 | 4.34e-01 | 78.0% | 95.7% |
| 2r7cA02 | 3.30.428.20 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain | 0.54 | 40.0 | 3.60e-01 | 99.1% | 54.8% |
| 2qyxB01 | 3.30.70.1360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like | 0.54 | 46.0 | 4.63e-01 | 100.0% | 90.8% |
| 3h7hB00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.54 | 42.0 | 4.41e-01 | 92.7% | 95.8% |
| 3lpxB02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.53 | 36.0 | 3.83e-01 | 70.6% | 80.9% |
| 2uvaG12 | 3.30.70.3330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 40.0 | 3.80e-01 | 80.7% | 97.7% |
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 37.0 | 3.74e-01 | 95.4% | 73.7% |
| 1zr6A03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.51 | 44.0 | 3.63e-01 | 97.2% | 67.0% |
| 1rjjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 39.0 | 3.92e-01 | 82.6% | 90.1% |
ECOD (76)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3692641 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.81 | 74.0 | 5.36e-01 | 98.2% | 83.0% |
| 4946875 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.80 | 73.0 | 5.41e-01 | 98.2% | 65.7% |
| 3921299 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.79 | 73.0 | 5.19e-01 | 100.0% | 70.3% |
| 3518002 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.79 | 73.0 | 5.13e-01 | 100.0% | 71.0% |
| 5010675 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.79 | 73.0 | 5.40e-01 | 99.1% | 70.4% |
| 4998612 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.79 | 72.0 | 5.51e-01 | 99.1% | 60.8% |
| 4038221 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.79 | 73.0 | 5.52e-01 | 99.1% | 66.3% |
| 5027616 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.79 | 72.0 | 5.37e-01 | 99.1% | 53.1% |
| 5000686 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.79 | 72.0 | 5.20e-01 | 98.2% | 67.4% |
| 4554731 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.79 | 72.0 | 5.53e-01 | 98.2% | 60.0% |
| 4197700 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.79 | 72.0 | 5.28e-01 | 99.1% | 68.7% |
| 4426711 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 70.0 | 5.29e-01 | 99.1% | 55.3% |
| 5023651 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.77 | 70.0 | 5.10e-01 | 100.0% | 56.6% |
| 4942021 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.76 | 70.0 | 5.13e-01 | 100.0% | 65.8% |
| 5069642 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.76 | 68.0 | 5.41e-01 | 99.1% | 63.2% |
| 4962169 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.75 | 68.0 | 5.23e-01 | 98.2% | 52.2% |
| 3238197 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.74 | 52.0 | 4.35e-01 | 71.6% | 57.8% |
| 5081312 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.74 | 68.0 | 5.37e-01 | 100.0% | 90.5% |
| 5065288 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.74 | 67.0 | 4.97e-01 | 99.1% | 58.2% |
| 4937156 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.74 | 68.0 | 4.99e-01 | 100.0% | 66.8% |
| None | — | 0.74 | 68.0 | 4.83e-01 | 100.0% | 53.2% | |
| 3278096 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.73 | 67.0 | 4.75e-01 | 100.0% | 52.2% |
| 4997193 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.73 | 67.0 | 5.04e-01 | 99.1% | 65.6% |
| 4986859 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.73 | 67.0 | 4.84e-01 | 100.0% | 55.9% |
| 4960009 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.73 | 67.0 | 4.88e-01 | 100.0% | 58.9% |
| 1779551 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.73 | 66.0 | 4.80e-01 | 100.0% | 79.3% |
| 4987159 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.73 | 67.0 | 4.99e-01 | 100.0% | 56.2% |
| 2711606 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.73 | 67.0 | 4.68e-01 | 100.0% | 49.5% |
| None | — | 0.73 | 66.0 | 4.74e-01 | 100.0% | 52.6% | |
| 5037338 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.72 | 65.0 | 4.89e-01 | 100.0% | 69.4% |
| 3959043 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.72 | 65.0 | 4.63e-01 | 100.0% | 50.8% |
| 3284431 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.72 | 65.0 | 4.68e-01 | 100.0% | 53.2% |
| 3604598 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.70 | 63.0 | 4.71e-01 | 100.0% | 62.9% |
| 4118092 | 304.28.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st | 0.66 | 44.0 | 5.17e-01 | 76.1% | 100.0% |
| 3530700 | 4.1.1.331 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4708 | 0.65 | 48.0 | 5.27e-01 | 92.7% | 98.8% |
| 3856783 | 304.7.1.23 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › DUF4708 | 0.64 | 47.0 | 5.22e-01 | 92.7% | 98.8% |
| 3600397 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.63 | 45.0 | 5.15e-01 | 81.7% | 100.0% |
| 2672260 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.63 | 47.0 | 4.89e-01 | 77.1% | 100.0% |
| 4316518 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.63 | 44.0 | 4.83e-01 | 73.4% | 100.0% |
| 4940473 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.62 | 47.0 | 5.14e-01 | 79.8% | 98.9% |
| 4234725 | 304.28.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st | 0.62 | 46.0 | 4.94e-01 | 78.0% | 92.6% |
| 3603014 | 304.28.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st | 0.62 | 45.0 | 5.02e-01 | 77.1% | 97.6% |
| 4682115 | 304.28.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st | 0.62 | 45.0 | 4.92e-01 | 77.1% | 92.2% |
| 5068786 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.62 | 46.0 | 4.94e-01 | 78.9% | 92.6% |
| 5027967 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.61 | 45.0 | 5.04e-01 | 78.0% | 100.0% |
| 4946181 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.61 | 47.0 | 4.60e-01 | 82.6% | 99.2% |
| 4209732 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.61 | 45.0 | 4.82e-01 | 78.9% | 100.0% |
| 4061057 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.60 | 43.0 | 4.65e-01 | 73.4% | 98.9% |
| 5023065 | 304.28.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st | 0.60 | 43.0 | 4.80e-01 | 77.1% | 96.5% |
| 3973601 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.60 | 46.0 | 4.81e-01 | 81.7% | 96.0% |
| 4993425 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.60 | 45.0 | 3.61e-01 | 78.0% | 99.5% |
| 5043879 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.60 | 43.0 | 4.69e-01 | 75.2% | 100.0% |
| 5027827 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.60 | 43.0 | 4.80e-01 | 76.1% | 100.0% |
| 4027199 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.59 | 42.0 | 4.55e-01 | 83.5% | 90.0% |
| 3810441 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.59 | 38.0 | 4.40e-01 | 75.2% | 96.0% |
| 3280191 | 304.4.1.7 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Cyclase_polyket | 0.58 | 44.0 | 4.46e-01 | 78.9% | 97.1% |
| 3215892 | 390.1.1.7 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 | 0.58 | 35.0 | 3.44e-01 | 94.5% | 53.3% |
| 2533026 | 304.159.1.1 ↗ | a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C | 0.58 | 46.0 | 4.64e-01 | 84.4% | 90.8% |
| 3914432 | 304.11.1.13 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › DUF4708 | 0.58 | 51.0 | 4.34e-01 | 97.2% | 88.9% |
| 3764453 | 304.24.1.33 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF4708 | 0.57 | 50.0 | 4.24e-01 | 97.2% | 87.6% |
| 162430 | 304.9.1.17 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF1866 | 0.57 | 42.0 | 4.53e-01 | 81.7% | 93.4% |
| 3942509 | 304.4.1.3 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII | 0.57 | 41.0 | 4.32e-01 | 76.1% | 86.3% |
| 3686228 | 3914.1.1.0 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain | 0.56 | 48.0 | 2.94e-01 | 94.5% | 64.8% |
| 3701221 | 304.43.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 | 0.56 | 44.0 | 4.56e-01 | 86.2% | 98.1% |
| 3620035 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.56 | 37.0 | 4.03e-01 | 94.5% | 84.7% |
| 3215882 | 304.8.1.72 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › SCVP | 0.55 | 40.0 | 4.36e-01 | 76.1% | 100.0% |
| 3855393 | 304.9.1.13 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › GUCT | 0.55 | 45.0 | 4.50e-01 | 95.4% | 87.3% |
| 4058893 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.55 | 40.0 | 4.48e-01 | 77.1% | 97.6% |
| 4931425 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.55 | 43.0 | 4.29e-01 | 84.4% | 90.9% |
| 3273114 | 304.9.1.23 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_5 | 0.54 | 46.0 | 4.47e-01 | 97.2% | 81.6% |
| 4098715 | 304.4.1.7 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Cyclase_polyket | 0.54 | 40.0 | 4.05e-01 | 78.9% | 93.6% |
| 3683250 | 304.112.1.3 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoN | 0.54 | 40.0 | 4.34e-01 | 78.9% | 98.9% |
| 3924393 | 304.17.1.2 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › Spt5-NGN | 0.53 | 43.0 | 4.47e-01 | 91.7% | 96.0% |
| 3729258 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 43.0 | 2.88e-01 | 95.4% | 22.4% |
| 4956505 | 304.57.1.0 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like | 0.53 | 43.0 | 4.45e-01 | 89.0% | 94.3% |
| 4592275 | 304.9.1.45 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4732 | 0.52 | 41.0 | 3.87e-01 | 84.4% | 72.6% |
D2
medium
residues 95-156
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nwoA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 44.0 | 2.96e-01 | 100.0% | 90.3% |