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late_expression_factor_2
Euk-VirNeodiprion_abietis_NPV
late_expression_factor_2__YP_667905__Neodiprion_abietis_NPV__204507
Identity
- Accession:
- YP_667905 ↗
- Protein ID:
- late_expression_factor_2
- Kingdom:
- euk
Quality
69.9
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Gammabaculovirus›
Neodiprion_abietis_nucleopolyhedrovirus
TaxID: 204507
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-51
D2
high
residues 78-194
Domain cluster:
rep: LEF-2__YP_009552671__Operophtera_brumata_nucleopolyhedrovirus__1046267__D88-194
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03041.21 best | Baculo_LEF-2 | 54.7 | 1.60e-14 | 72.7% | 45.9% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t9kA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.62 | 43.0 | 4.09e-01 | 70.9% | 82.1% |
| 2rq1A00 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.61 | 44.0 | 4.54e-01 | 75.2% | 87.2% |
| 3ipiA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 48.0 | 3.75e-01 | 90.6% | 95.5% |
| 2m63A00 | 1.25.40.780 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 38.0 | 3.48e-01 | 70.9% | 74.5% |
| 4m9aA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 41.0 | 4.17e-01 | 80.3% | 99.2% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.54 | 39.0 | 4.03e-01 | 76.1% | 100.0% |
| 7wf8B01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.53 | 39.0 | 3.93e-01 | 78.6% | 89.3% |
| 4eadA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.53 | 36.0 | 3.78e-01 | 70.1% | 97.2% |
| 1tqnA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.53 | 36.0 | 2.47e-01 | 71.8% | 40.4% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.52 | 37.0 | 3.42e-01 | 73.5% | 93.5% |
| 5xfaA04 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.50 | 35.0 | 3.94e-01 | 87.2% | 97.6% |
| 3gw7A00 | 1.10.3210.50 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.50 | 41.0 | 3.45e-01 | 90.6% | 81.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4935112 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.77 | 65.0 | 6.47e-01 | 88.9% | 89.2% |
| 3902312 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.65 | 47.0 | 4.37e-01 | 74.4% | 99.3% |
| 3719809 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.60 | 39.0 | 4.13e-01 | 70.9% | 76.0% |
| 3994805 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.53 | 43.0 | 4.43e-01 | 86.3% | 100.0% |
| 3794503 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 38.0 | 3.85e-01 | 73.5% | 76.1% |
| 3782444 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.53 | 42.0 | 3.52e-01 | 88.0% | 67.4% |