←Back to structures

late_expression_factor_3

Euk-Vir

Apocheima_cinerarium_nucleopolyhedrovirus

late_expression_factor_3__YP_006607812__Apocheima_cinerarium_nucleopolyhedrovirus__307461

Identity

Accession:
YP_006607812 ↗
Protein ID:
late_expression_factor_3
Kingdom:
euk

Quality

80.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Apocheima_cinerarium_nucleopolyhedrovirus

TaxID: 307461

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 61-133
PDB
Domain cluster: rep: IMGVR_UViG_3300029825_000003-3300029825-Ga0134835_10002589__D37-104
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05847.19 best Baculo_LEF-3 98.8 5.40e-28 93.2% 20.2%
D2 high residues 283-391
PDB
Domain cluster: rep: lef-3__YP_009186752__Sucra_jujuba_nucleopolyhedrovirus__1563660__D307-415
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05847.19 best Baculo_LEF-3 111.8 6.20e-32 99.1% 33.4%
D3 medium residues 141-192
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05847.19 best Baculo_LEF-3 67.3 2.10e-18 100.0% 15.3%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gzeA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.62 50.0 3.39e-01 92.3% 76.3%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.59 39.0 3.61e-01 100.0% 52.2%
6scxA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 41.0 3.07e-01 78.8% 29.6%
2p4gA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.57 43.0 2.75e-01 80.8% 24.2%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 36.0 3.11e-01 75.0% 35.7%
6ctzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 34.0 2.88e-01 86.5% 31.2%
2z3zA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.55 39.0 2.42e-01 80.8% 30.1%
1ybtB00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 38.0 2.79e-01 78.8% 73.3%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 40.0 2.81e-01 84.6% 77.2%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 33.0 2.66e-01 80.8% 27.6%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 35.0 2.08e-01 100.0% 9.0%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.04e-01 92.3% 93.4%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 37.0 3.38e-01 82.7% 68.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5021659 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.67 49.0 4.12e-01 84.6% 45.6%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 3.80e-01 96.2% 51.4%
5048008 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.61 39.0 2.69e-01 90.4% 18.9%
3395736 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.61 37.0 3.56e-01 90.4% 50.0%
4063634 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.58 40.0 3.08e-01 78.8% 30.6%
3291057 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 38.0 3.51e-01 73.1% 47.1%
4060846 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 40.0 3.29e-01 71.2% 60.0%
3517277 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.58 42.0 3.17e-01 80.8% 32.6%
3676791 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 45.0 4.13e-01 98.1% 77.3%
3276003 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.55 40.0 2.67e-01 80.8% 48.6%
278624 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.55 38.0 2.79e-01 78.8% 73.3%
5027789 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.54 46.0 3.73e-01 96.2% 56.0%
3204489 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 45.0 2.81e-01 94.2% 45.3%
3579212 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.54 39.0 3.20e-01 80.8% 57.1%
5074282 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.08e-01 96.2% 80.0%
3831756 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.53 39.0 2.52e-01 80.8% 38.9%
378133 10.32.1.174 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Lipl32 0.53 37.0 2.42e-01 75.0% 86.2%
3914796 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.52 44.0 3.50e-01 96.2% 77.3%
3466109 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.51 38.0 2.35e-01 80.8% 38.6%
3637847 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.51 37.0 3.17e-01 78.8% 80.0%
4938493 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 34.0 2.82e-01 71.2% 65.7%
3989990 7012.1.1.1 ↗ a+b complex topology › Monotopic phosphoglycosyl transferase (PGT)-like › Monotopic phosphoglycosyl transferase (PGT)-like › Monotopic phosphoglycosyl transferase (PGT)-like › Bac_transf 0.50 39.0 2.78e-01 98.1% 41.5%
D4 medium residues 193-281
PDB
Domain cluster: rep: lef3__YP_008378280__Hemileuca_sp._nucleopolyhedrovirus__1367203__D259-343
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05847.19 best Baculo_LEF-3 92.3 5.20e-26 100.0% 27.0%