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late_expression_factor_4
Euk-VirDiatraea_saccharalis_granulovirus
late_expression_factor_4__YP_009182284__Diatraea_saccharalis_granulovirus__1675862
Identity
- Accession:
- YP_009182284 ↗
- Protein ID:
- late_expression_factor_4
- Kingdom:
- euk
Quality
85.0
mean pLDDT
Taxonomy
TaxID: 1675862
Cluster
View cluster (54 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-195
Domain cluster:
rep: hypothetical_protein_psal_cds_310__YP_008436986__Pandoravirus_salinus__1349410__D56-163_204-331
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 235.9 | 1.40e-69 | 99.0% | 43.6% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bgyA00 | 3.20.100.10 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like | 0.64 | 59.0 | 5.65e-01 | 99.5% | 90.3% |
| 3gp6A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.58 | 29.0 | 3.22e-01 | 86.6% | 58.1% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 24.0 | 3.45e-01 | 99.0% | 87.3% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 23.0 | 3.40e-01 | 98.5% | 87.3% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 23.0 | 2.98e-01 | 99.0% | 71.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3937294 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.72 | 57.0 | 5.92e-01 | 100.0% | 88.3% |
| 3932045 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.70 | 56.0 | 5.83e-01 | 99.5% | 89.4% |
| 3253396 | 868.1.1.2 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase | 0.67 | 62.0 | 6.09e-01 | 100.0% | 91.2% |
| 5060673 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.64 | 56.0 | 5.65e-01 | 99.5% | 92.1% |
| 4996916 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.62 | 57.0 | 5.58e-01 | 99.5% | 91.2% |
| 5024124 | 304.15.1.0 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain | 0.62 | 25.0 | 3.70e-01 | 98.5% | 86.3% |
| 4953567 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.61 | 24.0 | 3.55e-01 | 97.9% | 81.2% |
| 3277423 | 331.18.1.4 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B | 0.61 | 30.0 | 3.41e-01 | 100.0% | 59.3% |
| 3603456 | 304.8.1.82 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 | 0.53 | 22.0 | 3.32e-01 | 88.7% | 86.7% |
D2
high
residues 207-382
Domain cluster:
rep: late_expression_factor_4__YP_667910__Neodiprion_abietis_NPV__204507__D219-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 202.0 | 2.70e-59 | 100.0% | 39.8% |
D3
high
residues 387-432
Domain cluster:
rep: late_expression_factor_4__YP_667910__Neodiprion_abietis_NPV__204507__D410-458