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late_expression_factor_4
Euk-VirTomelloso_virus
late_expression_factor_4__YP_009553409__Tomelloso_virus__2053981
Identity
- Accession:
- YP_009553409 ↗
- Protein ID:
- late_expression_factor_4
- Kingdom:
- euk
Quality
82.3
mean pLDDT
Cluster
View cluster (54 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-158
Domain cluster:
rep: LEF-4__YP_009051929__Penaeus_monodon_nudivirus__1529056__D14-178
D2
high
residues 164-324
Domain cluster:
rep: orf43_gene_product__YP_004956791__Helicoverpa_zea_nudivirus_2__1128424__D636-777
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kyhC01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.72 | 66.0 | 5.77e-01 | 100.0% | 91.3% |
| 4pz6A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.72 | 66.0 | 5.79e-01 | 100.0% | 89.8% |
| 3qwuA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.68 | 62.0 | 5.98e-01 | 96.3% | 97.2% |
| 6kduA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.66 | 61.0 | 5.22e-01 | 100.0% | 95.2% |
| 1wapA00 | 2.60.40.50 | Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like | 0.50 | 22.0 | 3.21e-01 | 88.8% | 94.1% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3610835 | 206.1.3.4 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme | 0.75 | 70.0 | 5.67e-01 | 100.0% | 76.2% |
| 3688782 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.73 | 68.0 | 5.08e-01 | 100.0% | 54.5% |
| 3998394 | 206.1.3.4 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme | 0.73 | 68.0 | 5.90e-01 | 100.0% | 88.3% |
| None | — | 0.73 | 68.0 | 5.12e-01 | 100.0% | 56.8% | |
| 4188682 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.73 | 67.0 | 5.71e-01 | 99.4% | 90.6% |
| 3596262 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.72 | 68.0 | 5.96e-01 | 100.0% | 85.2% |
| 3707854 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.72 | 67.0 | 6.12e-01 | 100.0% | 87.6% |
| 1298640 | 206.1.3.4 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme | 0.72 | 66.0 | 5.79e-01 | 100.0% | 88.7% |
| 4149372 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 24.0 | 3.72e-01 | 75.2% | 78.5% |
| 4053455 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.67 | 25.0 | 3.59e-01 | 75.2% | 72.9% |
| 4025579 | 2.1.1.86 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_Dis3 | 0.52 | 31.0 | 3.85e-01 | 80.7% | 98.9% |
| 3253012 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.50 | 28.0 | 3.33e-01 | 96.9% | 82.0% |
D3
high
residues 335-397
Domain cluster:
rep: ACH96172.1_lef-4-like_protein__YP_009345982__Kallithea_virus__1654582__D403-472