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late_expression_factor_4

Euk-Vir

Neodiprion_sertifer_nucleopolyhedrovirus

late_expression_factor_4__YP_025169__Neodiprion_sertifer_nucleopolyhedrovirus__111874

Identity

Accession:
YP_025169 ↗
Protein ID:
late_expression_factor_4
Kingdom:
euk

Quality

76.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Gammabaculovirus› Neodiprion_sertifer_nucleopolyhedrovirus

TaxID: 111874

Cluster

View cluster (54 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-214
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_310__YP_008436986__Pandoravirus_salinus__1349410__D56-163_204-331
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 170.0 1.30e-49 99.0% 44.1%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f46B00 3.30.1400.10 Alpha Beta › 2-Layer Sandwich › Cell Division Protein Zipa; Chain: A, › ZipA, C-terminal FtsZ-binding domain 0.63 33.0 3.99e-01 99.5% 74.3%
3bgyA00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.62 58.0 5.60e-01 100.0% 89.8%
2hzmB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.59 55.0 5.30e-01 99.0% 88.5%
2d1cA02 3.30.70.1570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 27.0 3.54e-01 99.5% 79.3%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 26.0 3.27e-01 87.4% 68.0%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 23.0 3.17e-01 98.6% 71.7%
2nuhA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 24.0 3.27e-01 99.0% 76.0%
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 23.0 3.19e-01 98.6% 74.8%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.55 23.0 3.58e-01 77.3% 97.5%
2x1wL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 23.0 3.15e-01 98.6% 74.3%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 27.0 3.48e-01 99.0% 86.2%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 22.0 2.94e-01 98.6% 71.0%
4eeeA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 24.0 3.06e-01 99.5% 73.9%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3937294 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.68 52.0 5.55e-01 100.0% 89.4%
3518771 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.66 51.0 5.50e-01 100.0% 91.7%
3932045 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.66 51.0 5.47e-01 100.0% 91.1%
3599391 868.1.1.2 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase 0.65 58.0 5.72e-01 100.0% 87.7%
4953567 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.65 23.0 3.69e-01 98.1% 82.5%
5024124 304.15.1.0 ↗ a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.61 24.0 3.65e-01 98.6% 87.5%
3497119 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.61 57.0 5.36e-01 99.0% 94.7%
4966859 304.51.1.8 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_C 0.57 21.0 3.56e-01 85.0% 96.0%
4486481 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.57 22.0 3.05e-01 99.0% 69.0%
3935285 11.1.1.891 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26189 0.55 23.0 3.27e-01 99.0% 81.1%
4554638 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.54 23.0 3.06e-01 99.0% 70.5%
4344924 868.1.1.3 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.54 45.0 4.49e-01 99.0% 84.8%
4059717 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 20.0 3.01e-01 75.8% 77.6%
3603456 304.8.1.82 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.53 21.0 3.25e-01 88.9% 86.7%
4964003 241.1.1.29 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF5813 0.51 26.0 3.01e-01 99.5% 63.9%
3514073 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 30.0 3.80e-01 88.9% 98.4%
3828738 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.50 26.0 3.01e-01 86.0% 64.5%
D2 high residues 225-376
PDB
Domain cluster: rep: late_expression_factor_4__YP_667910__Neodiprion_abietis_NPV__204507__D219-367
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 105.5 5.10e-30 100.0% 29.1%
D3 high residues 417-465
PDB
Domain cluster: rep: late_expression_factor_4__YP_667910__Neodiprion_abietis_NPV__204507__D410-458