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late_expression_factor_9

Euk-Vir

Diatraea_saccharalis_granulovirus

late_expression_factor_9__YP_009182302__Diatraea_saccharalis_granulovirus__1675862

Identity

Accession:
YP_009182302 ↗
Protein ID:
late_expression_factor_9
Kingdom:
euk

Quality

70.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Diatraea_saccharalis_granulovirus

TaxID: 1675862

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-151
PDB
D2 high residues 182-288
PDB
Domain cluster: rep: DNA-dependent_RNA_polymerase_subunit_rpo147__YP_232980__Vaccinia_virus__10245__D277-311_370-443
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05094.18 best LEF-9 220.1 7.60e-65 100.0% 22.0%
D3 medium residues 301-364
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05094.18 best LEF-9 71.3 9.30e-20 100.0% 13.2%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.71 57.0 4.49e-01 92.2% 57.6%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 47.0 4.97e-01 73.4% 82.1%
3graA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.65 52.0 3.73e-01 87.5% 91.9%
2mpcA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.64 55.0 4.99e-01 100.0% 71.1%
2n1fA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.63 52.0 4.80e-01 100.0% 69.7%
6ncvA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.63 51.0 4.70e-01 100.0% 68.1%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 47.0 4.49e-01 87.5% 89.7%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.60 47.0 3.76e-01 85.9% 67.7%
2do9A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.60 48.0 4.49e-01 100.0% 71.4%
2ab0A00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.60 47.0 3.39e-01 87.5% 87.2%
3cyfA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.60 47.0 3.42e-01 87.5% 90.9%
3vglA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 50.0 3.73e-01 100.0% 61.8%
1xriA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 44.0 3.42e-01 85.9% 84.1%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.57 43.0 3.08e-01 82.8% 31.6%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.55 42.0 3.46e-01 82.8% 89.3%
1t94A01 1.10.150.810 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.54 43.0 3.94e-01 100.0% 71.7%
4hn9A02 1.20.58.2180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 41.0 4.03e-01 84.4% 83.8%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.53 45.0 3.62e-01 98.4% 65.2%
5haxA01 1.20.58.1780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 39.0 2.75e-01 87.5% 98.4%
3iqtA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.51 39.0 3.43e-01 92.2% 52.6%
8sorA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 36.0 2.29e-01 76.6% 23.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022260 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.70 52.0 3.99e-01 78.1% 43.6%
5022243 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.69 52.0 4.00e-01 81.2% 42.1%
5012368 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.69 51.0 3.98e-01 81.2% 44.8%
4970826 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.68 52.0 4.01e-01 82.8% 47.6%
4946727 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.68 57.0 5.30e-01 93.8% 95.0%
5022218 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.68 51.0 4.20e-01 81.2% 53.9%
3899527 110.1.1.4 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN 0.67 55.0 4.94e-01 100.0% 64.2%
4426612 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.67 51.0 3.98e-01 81.2% 51.1%
3937617 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.66 50.0 4.56e-01 82.8% 76.5%
3218544 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.65 50.0 4.78e-01 87.5% 91.3%
3437288 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.58 48.0 4.68e-01 96.9% 85.3%
4344761 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.55 47.0 3.76e-01 98.4% 93.3%
D4 medium residues 428-492
PDB