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late_expression_factor_9

Euk-Vir

Malacosoma_neustria_nucleopolyhedrovirus

late_expression_factor_9__YP_009552184__Malacosoma_neustria_nucleopolyhedrovirus__38012

Identity

Accession:: YP_009552184 ↗
Protein ID:: late_expression_factor_9
Kingdom:: euk

Quality

72.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Malacosoma_neustria_nucleopolyhedrovirus

TaxID: 38012

Cluster

View cluster (46 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-161

PDB

D2 high residues 173-287

PDB

Domain cluster: rep: DNA-dependent_RNA_polymerase_subunit_rpo147__YP_232980__Vaccinia_virus__10245__D277-311_370-443

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05094.18 best	LEF-9	234.9	2.50e-69	100.0%	23.7%

D3 high residues 322-387

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05094.18 best	LEF-9	81.6	7.10e-23	100.0%	13.4%

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1bqbA02	1.10.390.10	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2	0.75	56.0	4.35e-01	80.3%	88.9%
3e3vA03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.68	48.0	5.11e-01	74.2%	85.7%
3aq5A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.66	49.0	4.15e-01	81.8%	92.3%
1j8yF01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.66	47.0	4.35e-01	75.8%	67.4%
2vlaA01	1.10.10.2080	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.66	45.0	4.29e-01	71.2%	64.1%
3cyfA00	3.40.50.880	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain	0.66	49.0	3.52e-01	78.8%	90.3%
2gkmA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.64	49.0	3.99e-01	83.3%	89.0%
2mpcA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.64	46.0	4.24e-01	78.8%	96.7%
2d2sA01	1.20.58.1210	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain	0.63	47.0	3.92e-01	80.3%	46.6%
4muoA01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.63	34.0	3.35e-01	77.3%	48.6%
3frrA00	1.20.1260.60	Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1	0.58	42.0	3.07e-01	77.3%	85.5%
3mq1A01	1.20.58.970	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	38.0	3.55e-01	71.2%	65.2%
7a0hA01	3.30.1140.60	Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit	0.56	41.0	3.60e-01	78.8%	65.3%
3fdqA01	1.20.120.1030	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain	0.54	38.0	3.21e-01	77.3%	41.0%
3onqA01	1.20.5.5100	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.54	32.0	3.76e-01	74.2%	90.5%
2gomA00	1.10.10.1270	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV	0.52	37.0	3.85e-01	75.8%	86.9%
1mhyG02	1.20.1280.30	Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2	0.50	37.0	3.65e-01	80.3%	78.1%

ECOD (24)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4180031	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.80	52.0	5.94e-01	71.2%	88.0%
4161600	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.78	49.0	5.57e-01	71.2%	86.0%
1068638	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.68	48.0	5.11e-01	74.2%	85.7%
3935995	101.1.2.127 ↗	alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8	0.66	44.0	4.26e-01	74.2%	61.3%
3505632	101.1.2.127 ↗	alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8	0.65	44.0	4.10e-01	71.2%	57.5%
3646235	101.1.10.7 ↗	alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C	0.64	50.0	4.64e-01	86.4%	88.2%
4073017	101.35.1.0 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX	0.64	44.0	4.73e-01	72.7%	89.1%
3937617	170.1.1.0 ↗	alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C	0.62	43.0	4.04e-01	74.2%	65.9%
3166807	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.61	42.0	3.07e-01	72.7%	25.9%
3855880	622.4.1.19 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › CD20	0.58	41.0	3.57e-01	75.8%	62.9%
3330013	4982.1.1.0 ↗	alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain	0.57	44.0	3.94e-01	84.8%	61.1%
3530751	5069.1.1.7 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561	0.56	46.0	3.31e-01	98.5%	93.2%
3960391	101.1.4.0 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like	0.55	37.0	3.66e-01	80.3%	64.0%
4034030	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	39.0	3.01e-01	75.8%	36.0%
4988092	601.29.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › TM1646-like › TM1646-like	0.54	37.0	3.49e-01	72.7%	94.1%
3228529	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.54	41.0	3.29e-01	86.4%	71.3%
3229936	109.27.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK	0.54	41.0	3.15e-01	81.8%	52.7%
5072397	4095.1.1.1 ↗	alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N	0.53	42.0	3.62e-01	86.4%	55.2%
147067	3276.1.1.1 ↗	alpha arrays › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › MogR_DNAbind	0.52	37.0	3.75e-01	78.8%	78.1%
3650870	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.52	42.0	3.38e-01	93.9%	77.9%
3648924	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	38.0	3.39e-01	78.8%	90.5%
3433099	109.4.1.1336 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3	0.51	38.0	3.06e-01	83.3%	74.7%
3912101	604.6.1.1 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT	0.50	37.0	3.39e-01	84.8%	93.0%
5038448	109.7.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E	0.50	35.0	3.34e-01	74.2%	62.5%

D4 medium residues 388-439

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05094.18 best	LEF-9	70.2	2.00e-19	100.0%	10.7%

D5 medium residues 440-496

PDB