late_protein_L1

Euk-Vir

Alphapapillomavirus_4

late_protein_L1__NP_077122__Alphapapillomavirus_4__337043

Identity

76.7 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Alphapapillomavirus› Alphapapillomavirus_4

TaxID: 337043

View cluster (154 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 39-128_368-415_454-481

PDB

Domain cluster: rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	149.2	2.50e-43	55.4%	18.1%
PF00500.25	Late_protein_L1	68.4	7.90e-19	30.7%	9.9%
PF00500.25	Late_protein_L1	34.1	2.00e-08	18.1%	5.6%

D2 medium residues 129-185_198-277_298-367

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	188.7	2.80e-55	67.6%	30.8%
PF00500.25	Late_protein_L1	98.3	7.10e-28	34.3%	13.9%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dzlA00	2.60.175.20	Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus	0.97	95.0	6.97e-01	100.0%	53.6%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2707156	10.2.1.4 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1	0.97	95.0	6.89e-01	100.0%	50.5%
2806413	10.2.1.4 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1	0.97	95.0	6.92e-01	100.0%	52.6%