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lef-1
Euk-VirSpodoptera_frugiperda_granulovirus
lef-1__YP_009121852__Spodoptera_frugiperda_granulovirus__307454
Identity
- Accession:
- YP_009121852 ↗
- Protein ID:
- lef-1
- Kingdom:
- euk
Quality
90.1
mean pLDDT
Taxonomy
TaxID: 307454
Cluster
View cluster (46 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-74_218-235
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.64 | 48.0 | 4.32e-01 | 79.8% | 73.2% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.63 | 47.0 | 4.33e-01 | 79.8% | 77.3% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.61 | 43.0 | 4.79e-01 | 77.5% | 97.0% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.60 | 45.0 | 4.22e-01 | 79.8% | 75.2% |
| 3q8pB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 43.0 | 4.12e-01 | 77.5% | 78.7% |
| 2olsA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.59 | 44.0 | 3.50e-01 | 79.8% | 47.0% |
| 3ffyA00 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.58 | 38.0 | 3.58e-01 | 80.9% | 53.6% |
| 4bi3A01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.58 | 37.0 | 3.75e-01 | 77.5% | 63.7% |
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 42.0 | 3.77e-01 | 79.8% | 87.6% |
| 1blwA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 48.0 | 4.63e-01 | 93.3% | 91.2% |
| 1n26A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 43.0 | 4.53e-01 | 93.3% | 96.2% |
| 3fgtA01 | 2.10.70.60 | Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 | 0.55 | 32.0 | 3.90e-01 | 77.5% | 94.5% |
| 4wtxA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 4.36e-01 | 89.9% | 89.7% |
| 2pttB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 4.22e-01 | 91.0% | 80.6% |
| 2q7nA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 4.41e-01 | 93.3% | 92.9% |
| 3dnhA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 45.0 | 3.85e-01 | 94.4% | 88.1% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.53 | 47.0 | 3.86e-01 | 100.0% | 86.0% |
| 7y8sA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 45.0 | 4.48e-01 | 94.4% | 96.8% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.53 | 42.0 | 3.76e-01 | 86.5% | 77.2% |
| 1yq2A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.98e-01 | 89.9% | 87.8% |
| 4bkwA03 | 3.30.500.40 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.53 | 32.0 | 2.88e-01 | 96.6% | 40.5% |
| 2e56A00 | 2.60.40.770 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 43.0 | 3.71e-01 | 91.0% | 88.2% |
| 2h41A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 4.23e-01 | 91.0% | 84.2% |
| 1a6cA02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 38.0 | 3.16e-01 | 77.5% | 75.2% |
| 2qlcA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 40.0 | 3.59e-01 | 83.1% | 80.2% |
| 3b2dC00 | 2.60.40.770 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 43.0 | 3.76e-01 | 94.4% | 77.7% |
| 4r7vA00 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 41.0 | 3.56e-01 | 89.9% | 88.6% |
| 3r8qA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 4.15e-01 | 91.0% | 87.0% |
| 3nziA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 41.0 | 3.90e-01 | 86.5% | 72.6% |
| 4p04A01 | 2.60.40.3100 | Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain | 0.51 | 41.0 | 3.94e-01 | 89.9% | 86.8% |
| 4dyoA02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.51 | 37.0 | 3.25e-01 | 77.5% | 96.4% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4973338 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.76 | 70.0 | 4.79e-01 | 100.0% | 87.4% |
| 5011497 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.72 | 65.0 | 4.98e-01 | 100.0% | 92.5% |
| 4394681 | 862.1.1.4 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase | 0.71 | 61.0 | 4.66e-01 | 95.5% | 85.4% |
| 5065288 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.70 | 63.0 | 4.44e-01 | 100.0% | 83.6% |
| 4518867 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.63 | 47.0 | 4.61e-01 | 78.7% | 100.0% |
| 4031279 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.62 | 46.0 | 3.99e-01 | 78.7% | 55.7% |
| 4158528 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.62 | 46.0 | 4.29e-01 | 79.8% | 68.7% |
| 4301885 | 377.4.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › RRG8 | 0.61 | 38.0 | 3.72e-01 | 73.0% | 56.6% |
| 4659490 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.61 | 50.0 | 4.62e-01 | 91.0% | 73.0% |
| 4992755 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.60 | 44.0 | 4.48e-01 | 78.7% | 90.0% |
| 3609926 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.60 | 44.0 | 3.95e-01 | 79.8% | 71.5% |
| 3740728 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.59 | 44.0 | 4.48e-01 | 77.5% | 97.6% |
| 146289 | 4187.2.1.1 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA | 0.59 | 44.0 | 4.58e-01 | 79.8% | 92.7% |
| 2559791 | 4187.2.1.1 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA | 0.59 | 42.0 | 4.18e-01 | 76.4% | 93.7% |
| 4177322 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.59 | 43.0 | 3.80e-01 | 79.8% | 57.9% |
| 3255733 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.58 | 44.0 | 4.24e-01 | 78.7% | 98.0% |
| 4028488 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.58 | 44.0 | 3.84e-01 | 82.0% | 66.4% |
| 4373012 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.58 | 43.0 | 4.04e-01 | 78.7% | 70.0% |
| 3509804 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.58 | 41.0 | 3.83e-01 | 73.0% | 68.5% |
| 3943542 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.57 | 44.0 | 3.96e-01 | 83.1% | 83.2% |
| 4960572 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 42.0 | 3.45e-01 | 78.7% | 83.6% |
| 4452137 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.57 | 42.0 | 3.74e-01 | 79.8% | 85.9% |
| 3609261 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 37.0 | 3.55e-01 | 77.5% | 56.2% |
| 2060725 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 38.0 | 4.06e-01 | 79.8% | 82.7% |
| 5016546 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 41.0 | 4.36e-01 | 76.4% | 98.7% |
| 4544770 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.55 | 42.0 | 3.69e-01 | 83.1% | 75.0% |
| 3924486 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.55 | 41.0 | 2.58e-01 | 79.8% | 47.8% |
| 3586087 | 11.1.4.111 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › fn3 | 0.54 | 44.0 | 4.28e-01 | 88.8% | 86.0% |
| 3510263 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.54 | 41.0 | 3.49e-01 | 82.0% | 82.0% |
| 4181458 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.54 | 39.0 | 3.71e-01 | 77.5% | 84.5% |
| 4309308 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.54 | 38.0 | 3.96e-01 | 75.3% | 87.5% |
| 3582833 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.54 | 37.0 | 3.56e-01 | 74.2% | 96.4% |
| 3512723 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.53 | 45.0 | 3.43e-01 | 94.4% | 91.8% |
| 4478659 | 3435.1.1.3 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-L | 0.53 | 47.0 | 3.30e-01 | 100.0% | 96.6% |
| 3223684 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.53 | 45.0 | 4.31e-01 | 93.3% | 88.6% |
| 4162075 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.53 | 45.0 | 4.05e-01 | 93.3% | 80.8% |
| 4012187 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.53 | 46.0 | 3.71e-01 | 100.0% | 71.4% |
| 3931855 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.53 | 42.0 | 3.21e-01 | 87.6% | 63.2% |
| 4280109 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.52 | 40.0 | 3.60e-01 | 83.1% | 81.6% |
| 3832339 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 44.0 | 3.79e-01 | 100.0% | 82.6% |
| 4329297 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.51 | 40.0 | 3.57e-01 | 83.1% | 81.6% |
| 1348620 | 221.11.1.1 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in probable beta-lactamase › beta-grasp fold domain in probable beta-lactamase › DUF4888 | 0.51 | 37.0 | 3.94e-01 | 79.8% | 89.6% |
| 3518595 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 42.0 | 4.12e-01 | 89.9% | 89.5% |
| 4125527 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.51 | 39.0 | 3.46e-01 | 83.1% | 77.0% |
| 3210907 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 38.0 | 3.79e-01 | 80.9% | 76.8% |
| 3620151 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 41.0 | 3.75e-01 | 86.5% | 90.4% |
| 4567712 | 10.32.1.48 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 | 0.51 | 41.0 | 3.67e-01 | 88.8% | 94.4% |
| 3246201 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.51 | 37.0 | 2.60e-01 | 77.5% | 41.1% |
| 4566126 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.50 | 38.0 | 3.50e-01 | 79.8% | 73.9% |
| 3344043 | 11.1.4.64 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CBM53 | 0.50 | 42.0 | 3.74e-01 | 94.4% | 76.2% |
| 4169622 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.50 | 44.0 | 3.36e-01 | 100.0% | 53.6% |
| 4182376 | 323.1.1.25 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › SIDD_N | 0.50 | 43.0 | 3.59e-01 | 100.0% | 72.4% |
D2
high
residues 80-214