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lef-2

Euk-Vir

Spodoptera_frugiperda_granulovirus

lef-2__YP_009121815__Spodoptera_frugiperda_granulovirus__307454

Identity

Accession:: YP_009121815 ↗
Protein ID:: lef-2
Kingdom:: euk

Quality

80.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Spodoptera_frugiperda_granulovirus

TaxID: 307454

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-85

PDB

Domain cluster: rep: lef2__YP_009666652__Oxyplax_ochracea_nucleopolyhedrovirus__2083176__D13-67

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03041.21 best	Baculo_LEF-2	53.5	3.60e-14	70.5%	32.1%

D2 high residues 99-195

PDB

Domain cluster: rep: LEF-2__YP_009552671__Operophtera_brumata_nucleopolyhedrovirus__1046267__D88-194

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03041.21 best	Baculo_LEF-2	108.0	5.90e-31	95.9%	56.0%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2rq1A00	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.62	44.0	4.33e-01	76.3%	68.8%
3pvlA03	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.59	42.0	3.95e-01	74.2%	66.9%
2c0kB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.58	43.0	3.82e-01	81.4%	93.3%
3himA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	39.0	3.13e-01	71.1%	66.8%
1eyvB00	1.10.940.10	Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like	0.56	48.0	4.35e-01	95.9%	100.0%
2juaA00	1.20.1480.30	Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Designed four-helix bundle protein	0.56	40.0	4.01e-01	77.3%	88.2%
3e2vB00	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.54	45.0	3.11e-01	93.8%	57.7%
1vctA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.53	37.0	3.56e-01	71.1%	72.5%
3dd7C00	1.20.120.1870	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain	0.51	44.0	4.13e-01	97.9%	81.1%
3u9jA00	1.20.120.520	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like	0.51	35.0	3.11e-01	73.2%	66.2%
4dccA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.51	34.0	3.77e-01	73.2%	90.5%
4hwdD00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.51	38.0	3.97e-01	87.6%	86.7%
1g03A00	1.10.375.10	Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein	0.50	43.0	3.93e-01	96.9%	86.6%
2p6vA00	1.20.120.1110	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain	0.50	36.0	3.62e-01	77.3%	75.3%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4211332	633.10.1.35 ↗	alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › NKAIN	0.58	42.0	3.98e-01	77.3%	78.3%
3177832	174.1.1.62 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › PF27705	0.55	40.0	3.47e-01	77.3%	64.4%
4013285	4121.1.1.0 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like	0.55	45.0	3.50e-01	93.8%	81.2%
3831998	633.2.1.0 ↗	alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein	0.54	39.0	3.64e-01	76.3%	65.6%
3781268	109.4.1.109 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1	0.54	38.0	2.48e-01	73.2%	17.1%
3480976	601.1.2.100 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PF31009	0.53	40.0	3.27e-01	79.4%	69.7%
3942983	101.1.4.8 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CP76	0.53	38.0	3.36e-01	89.7%	48.0%
3786750	604.3.1.1 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG	0.50	40.0	4.00e-01	87.6%	81.7%
2324029	601.4.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains	0.50	37.0	3.50e-01	87.6%	63.1%