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lef-3

Euk-Vir

Trichoplusia_ni_granulovirus_LBIV-12

lef-3__YP_009506200__Trichoplusia_ni_granulovirus_LBIV-12__1916701

Identity

Accession:
YP_009506200 ↗
Protein ID:
lef-3
Kingdom:
euk

Quality

78.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-92
PDB
D2 high residues 95-227
PDB
D3 high residues 240-342
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 53.0 5.87e-01 94.2% 100.0%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 60.0 6.18e-01 97.1% 98.0%
2pmqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.67 50.0 4.63e-01 77.7% 93.0%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 54.0 5.25e-01 98.1% 79.3%
2e2dC02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 55.0 5.72e-01 96.1% 100.0%
4fnfA00 2.40.50.50 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 50.0 5.15e-01 92.2% 85.7%
1wueB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 48.0 4.26e-01 78.6% 88.6%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 48.0 4.76e-01 96.1% 75.5%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 48.0 4.32e-01 78.6% 86.7%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 53.0 4.98e-01 94.2% 74.2%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 48.0 4.35e-01 79.6% 93.7%
1f9cA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 48.0 4.53e-01 78.6% 92.6%
2pgwA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 46.0 4.14e-01 78.6% 90.0%
4it1B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 47.0 4.11e-01 79.6% 90.2%
3vfcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 47.0 4.13e-01 79.6% 86.6%
3jvaA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 49.0 4.75e-01 96.1% 77.2%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 46.0 4.37e-01 79.6% 94.3%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 45.0 4.13e-01 78.6% 88.4%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.61 30.0 4.13e-01 76.7% 96.1%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 42.0 4.12e-01 96.1% 65.8%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 47.0 4.36e-01 82.5% 96.2%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 47.0 3.08e-01 85.4% 34.6%
5xd7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 45.0 4.22e-01 96.1% 64.6%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.59 26.0 3.18e-01 93.2% 61.5%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 46.0 4.46e-01 83.5% 98.3%
2nqlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 44.0 3.82e-01 80.6% 92.9%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 47.0 4.56e-01 85.4% 89.5%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 45.0 4.10e-01 81.6% 86.9%
2vqeE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 32.0 4.02e-01 79.6% 87.5%
1tkkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 46.0 4.47e-01 96.1% 77.4%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 48.0 4.92e-01 94.2% 94.9%
2oqhA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 42.0 4.10e-01 78.6% 88.6%
3bjsA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 43.0 4.17e-01 96.1% 71.8%
1kczA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 44.0 3.81e-01 84.5% 84.0%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 49.0 4.54e-01 94.2% 80.3%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 46.0 4.33e-01 96.1% 73.1%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 43.0 4.17e-01 84.5% 99.2%
3ugvA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 48.0 4.50e-01 96.1% 80.2%
3ua3A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.54 47.0 3.78e-01 96.1% 91.1%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 34.0 3.10e-01 100.0% 45.1%
3toyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 46.0 4.36e-01 96.1% 79.5%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 42.0 4.20e-01 85.4% 87.9%
1nf3C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 40.0 3.84e-01 82.5% 83.7%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 33.0 3.53e-01 93.2% 73.0%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 44.0 4.14e-01 96.1% 77.6%
2qxlB05 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.50 38.0 3.52e-01 100.0% 63.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000724 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 61.0 6.33e-01 98.1% 100.0%
3317450 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 53.0 5.22e-01 94.2% 74.5%
3678038 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.70 49.0 5.60e-01 76.7% 100.0%
4995179 236.3.1.1 beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 0.70 45.0 4.88e-01 98.1% 78.8%
3997614 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 55.0 5.22e-01 93.2% 71.7%
3667340 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.68 59.0 5.57e-01 96.1% 81.6%
4028113 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.68 57.0 5.18e-01 98.1% 67.9%
3640971 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 60.0 5.22e-01 98.1% 71.0%
3446499 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.66 58.0 5.50e-01 94.2% 82.5%
3484671 3433.1.1.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.66 29.0 3.94e-01 76.7% 82.0%
3366703 2.1.1.157 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB2 0.66 56.0 5.12e-01 92.2% 73.3%
4998126 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.66 47.0 5.12e-01 99.0% 90.6%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 39.0 3.84e-01 99.0% 54.5%
3266046 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.65 35.0 4.46e-01 79.6% 90.0%
4448420 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 56.0 4.26e-01 94.2% 80.4%
3917310 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 38.0 4.66e-01 89.3% 92.3%
3666655 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 55.0 5.17e-01 93.2% 79.2%
3222288 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 55.0 5.38e-01 94.2% 88.7%
3740117 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 57.0 4.65e-01 100.0% 77.4%
3287981 2.1.1.94 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.63 43.0 4.97e-01 84.5% 96.0%
4405678 304.114.1.6 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › DNA_pol_B_exo1 0.63 54.0 4.02e-01 94.2% 79.2%
3257603 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 48.0 4.61e-01 81.6% 94.2%
4982481 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 48.0 5.02e-01 100.0% 89.5%
4929979 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.62 49.0 4.85e-01 99.0% 79.6%
3802227 2484.1.1.197 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 0.62 53.0 3.10e-01 94.2% 22.9%
None 0.61 53.0 3.12e-01 94.2% 24.2%
3800763 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.61 53.0 3.89e-01 94.2% 73.8%
5010892 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.61 44.0 4.46e-01 89.3% 74.3%
3409738 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.61 37.0 4.56e-01 93.2% 96.9%
4012486 5.1.4.321 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 0.60 34.0 2.20e-01 81.6% 11.5%
416354 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.60 45.0 4.33e-01 96.1% 68.6%
4103142 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.60 40.0 4.44e-01 98.1% 87.5%
139759 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.60 46.0 4.50e-01 96.1% 75.2%
3453242 192.18.1.0 alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.59 45.0 2.89e-01 81.6% 89.1%
3255783 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.58 36.0 4.26e-01 94.2% 90.0%
3285635 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 46.0 4.76e-01 92.2% 93.7%
3744517 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 45.0 4.29e-01 82.5% 91.7%
4330018 330.1.1.6 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.57 32.0 3.71e-01 86.4% 76.0%
3693076 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 47.0 4.19e-01 91.3% 84.7%
3382312 192.18.1.0 alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.56 39.0 2.90e-01 92.2% 26.8%
5056218 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 29.0 3.36e-01 98.1% 71.4%
5069135 7504.1.1.2 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.55 40.0 3.27e-01 75.7% 96.2%
4938125 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.55 40.0 4.37e-01 91.3% 94.1%
5038844 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.55 33.0 3.67e-01 86.4% 77.5%
4944869 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 37.0 3.41e-01 71.8% 71.5%
4838879 3274.1.1.1 extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 0.53 36.0 3.96e-01 86.4% 90.0%
3253837 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 41.0 2.79e-01 82.5% 30.6%
4003790 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.51 34.0 3.44e-01 79.6% 66.7%
3298321 3274.1.1.1 extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 0.51 35.0 3.35e-01 81.6% 59.7%
3336892 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.51 35.0 3.34e-01 81.6% 59.2%
4426077 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.51 38.0 3.34e-01 93.2% 52.9%
3711062 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 38.0 3.87e-01 91.3% 82.0%
4538498 7504.1.1.2 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.50 40.0 3.32e-01 83.5% 59.4%
4878112 3274.1.1.1 extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 0.50 32.0 3.20e-01 71.8% 62.1%