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lef-4
Euk-VirOryctes_rhinoceros_nudivirus
lef-4__YP_002321353__Oryctes_rhinoceros_nudivirus__92521
Identity
- Accession:
- YP_002321353 ↗
- Protein ID:
- lef-4
- Kingdom:
- euk
Quality
74.6
mean pLDDT
Taxonomy
TaxID: 92521
Cluster
View cluster (54 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-154
Domain cluster:
rep: LEF-4__YP_009051929__Penaeus_monodon_nudivirus__1529056__D14-178
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eenA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.71 | 66.0 | 6.12e-01 | 99.3% | 89.3% |
| 2g30A02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.62 | 38.0 | 4.21e-01 | 100.0% | 75.9% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.61 | 37.0 | 4.12e-01 | 100.0% | 74.8% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 30.0 | 3.26e-01 | 83.9% | 54.0% |
| 2fblB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.58 | 47.0 | 4.73e-01 | 99.3% | 84.5% |
| 2mj7A00 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.56 | 35.0 | 3.59e-01 | 100.0% | 63.8% |
| 1e5pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 43.0 | 4.23e-01 | 100.0% | 81.9% |
| 1dzkA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 40.0 | 4.02e-01 | 100.0% | 81.1% |
| 4wfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 40.0 | 3.90e-01 | 100.0% | 77.8% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3612094 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.70 | 65.0 | 5.43e-01 | 100.0% | 88.4% |
| 4026208 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.57 | 35.0 | 3.85e-01 | 100.0% | 74.8% |
| 5056277 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.57 | 36.0 | 3.97e-01 | 85.3% | 76.7% |
| 3702663 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.56 | 34.0 | 3.43e-01 | 86.0% | 57.9% |
| 1140712 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.56 | 35.0 | 3.70e-01 | 100.0% | 69.2% |
| 3506274 | 331.2.1.7 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM1_C_vert_fung | 0.56 | 39.0 | 4.22e-01 | 99.3% | 83.2% |
| 4026594 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.54 | 36.0 | 3.95e-01 | 100.0% | 82.2% |
| 5069097 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.54 | 36.0 | 3.90e-01 | 100.0% | 80.0% |
| 5062234 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.54 | 36.0 | 3.94e-01 | 100.0% | 82.5% |
| 3805923 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 34.0 | 3.97e-01 | 84.6% | 89.5% |
| 4671100 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.51 | 42.0 | 4.08e-01 | 100.0% | 78.7% |
| 3784456 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.50 | 41.0 | 4.16e-01 | 100.0% | 87.9% |
| 3564821 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.50 | 41.0 | 3.99e-01 | 100.0% | 78.7% |
| 3868039 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.50 | 41.0 | 4.00e-01 | 100.0% | 79.7% |
| 1684916 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.50 | 40.0 | 3.90e-01 | 100.0% | 77.8% |
D2
high
residues 190-327
Domain cluster:
rep: orf43_gene_product__YP_004956791__Helicoverpa_zea_nudivirus_2__1128424__D636-777
D3
high
residues 328-399
Domain cluster:
rep: ACH96172.1_lef-4-like_protein__YP_009345982__Kallithea_virus__1654582__D403-472