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lef-4
Euk-VirClostera_anachoreta_granulovirus
lef-4__YP_004376288__Clostera_anachoreta_granulovirus__283675
Identity
- Accession:
- YP_004376288 ↗
- Protein ID:
- lef-4
- Kingdom:
- euk
Quality
83.9
mean pLDDT
Taxonomy
TaxID: 283675
Cluster
View cluster (54 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-196
Domain cluster:
rep: hypothetical_protein_psal_cds_310__YP_008436986__Pandoravirus_salinus__1349410__D56-163_204-331
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 225.0 | 2.70e-66 | 98.5% | 43.6% |
D2
high
residues 398-445
Domain cluster:
rep: late_expression_factor_4__YP_667910__Neodiprion_abietis_NPV__204507__D410-458
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e9gB00 | 3.90.80.10 | Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase | 0.87 | 77.0 | 4.67e-01 | 97.9% | 42.4% |
| 3go5A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.87 | 76.0 | 6.65e-01 | 95.8% | 87.1% |
| 1go3E01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.86 | 77.0 | 6.11e-01 | 100.0% | 87.2% |
| 1k3rA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.85 | 75.0 | 6.98e-01 | 97.9% | 89.8% |
| 1u0lA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.84 | 77.0 | 6.89e-01 | 100.0% | 95.3% |
| 3go5A01 | 2.40.50.330 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.84 | 72.0 | 6.29e-01 | 95.8% | 77.5% |
| 1t9hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.83 | 75.0 | 6.45e-01 | 100.0% | 86.3% |
| 3go5A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.82 | 70.0 | 5.99e-01 | 97.9% | 82.3% |
| 2dgyA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.81 | 73.0 | 6.11e-01 | 100.0% | 79.7% |
| 4oonA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 72.0 | 5.54e-01 | 100.0% | 72.1% |
| 3d0fA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 70.0 | 6.10e-01 | 97.9% | 94.5% |
| 4rg1A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 72.0 | 6.47e-01 | 100.0% | 90.8% |
| 5l37C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.80 | 72.0 | 5.89e-01 | 100.0% | 88.4% |
| 3zjyC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 71.0 | 6.12e-01 | 100.0% | 79.7% |
| 1p16B02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 70.0 | 5.07e-01 | 100.0% | 60.9% |
| 2exdA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 69.0 | 6.00e-01 | 100.0% | 70.3% |
| 3cp0A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 68.0 | 6.27e-01 | 100.0% | 88.9% |
| 3wwvA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 68.0 | 6.20e-01 | 100.0% | 84.4% |
| 4pz7A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 68.0 | 4.87e-01 | 100.0% | 58.4% |
| 2k5hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 67.0 | 5.87e-01 | 100.0% | 74.0% |
| 2k14A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 66.0 | 5.53e-01 | 100.0% | 71.4% |
| 3fvqA02 | 2.40.50.450 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.75 | 57.0 | 5.94e-01 | 83.3% | 90.9% |
| 3k0xA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.74 | 62.0 | 5.02e-01 | 100.0% | 61.6% |
| 3rn5A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 62.0 | 5.11e-01 | 100.0% | 78.3% |
| 4tquS02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.73 | 62.0 | 5.74e-01 | 100.0% | 84.4% |
| 7lmaF01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 60.0 | 5.05e-01 | 100.0% | 63.2% |
| 1g29103 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.70 | 61.0 | 5.54e-01 | 100.0% | 84.6% |
| 1yezA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 55.0 | 5.02e-01 | 100.0% | 77.9% |
| 2qgqA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 52.0 | 5.03e-01 | 97.9% | 98.3% |
| 1z47A02 | 2.40.50.300 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.66 | 53.0 | 5.48e-01 | 100.0% | 100.0% |
| 3j7aF02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.66 | 55.0 | 5.42e-01 | 97.9% | 100.0% |
| 1io1A02 | 2.170.280.10 | Mainly Beta › Beta Complex › f41 fragment of flagellin, middle domain › f41 fragment of flagellin, middle domain | 0.64 | 44.0 | 3.26e-01 | 72.9% | 64.9% |
| 4bpnW02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.64 | 53.0 | 5.22e-01 | 97.9% | 100.0% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 49.0 | 4.45e-01 | 100.0% | 61.8% |
| 1v4pA02 | 3.30.54.20 | Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › | 0.59 | 46.0 | 4.69e-01 | 97.9% | 93.6% |
| 4oo1I01 | 2.40.50.880 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 40.0 | 3.61e-01 | 93.8% | 93.3% |
| 1b3qA04 | 2.40.50.180 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 | 0.51 | 39.0 | 3.76e-01 | 100.0% | 100.0% |
| 1zzvA01 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.51 | 38.0 | 3.46e-01 | 89.6% | 89.0% |
| 1w4bA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 38.0 | 2.55e-01 | 87.5% | 71.2% |
ECOD (85)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5037071 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.90 | 76.0 | 7.23e-01 | 91.7% | 98.2% |
| 4161829 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.89 | 82.0 | 6.96e-01 | 100.0% | 76.0% |
| 4986053 | 2.1.1.21 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 | 0.89 | 80.0 | 6.77e-01 | 97.9% | 73.3% |
| 4067858 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.88 | 81.0 | 7.06e-01 | 100.0% | 92.9% |
| 4088295 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.88 | 81.0 | 6.69e-01 | 100.0% | 77.5% |
| 4930895 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.88 | 79.0 | 6.62e-01 | 100.0% | 78.8% |
| 4250218 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.88 | 76.0 | 6.90e-01 | 95.8% | 95.3% |
| 4677730 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.87 | 78.0 | 7.03e-01 | 97.9% | 93.8% |
| 4083610 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.87 | 76.0 | 6.81e-01 | 95.8% | 95.4% |
| 4062332 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.87 | 76.0 | 6.81e-01 | 95.8% | 92.3% |
| 3578390 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.87 | 79.0 | 5.15e-01 | 100.0% | 32.6% |
| 4583050 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.86 | 80.0 | 6.90e-01 | 100.0% | 80.0% |
| 4379699 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.86 | 74.0 | 6.70e-01 | 95.8% | 92.3% |
| 5026108 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.86 | 75.0 | 6.96e-01 | 95.8% | 90.0% |
| 4131641 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.86 | 75.0 | 7.05e-01 | 95.8% | 94.8% |
| 2768809 | 2.1.1.73 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N | 0.86 | 78.0 | 6.90e-01 | 100.0% | 88.1% |
| 5035697 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.86 | 77.0 | 6.89e-01 | 97.9% | 86.2% |
| 3403141 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.86 | 76.0 | 6.51e-01 | 97.9% | 81.3% |
| 4400854 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.85 | 72.0 | 6.61e-01 | 91.7% | 96.7% |
| 4215880 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.85 | 75.0 | 6.57e-01 | 97.9% | 92.8% |
| 5042551 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.85 | 74.0 | 6.73e-01 | 95.8% | 85.7% |
| 5040373 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.85 | 74.0 | 6.51e-01 | 97.9% | 72.9% |
| 4330070 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.84 | 74.0 | 4.44e-01 | 97.9% | 19.4% |
| 4301110 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.84 | 70.0 | 6.30e-01 | 91.7% | 98.5% |
| 4338421 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.84 | 71.0 | 6.46e-01 | 95.8% | 96.9% |
| 5022965 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.83 | 70.0 | 6.84e-01 | 93.8% | 92.5% |
| 4994604 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.83 | 75.0 | 5.27e-01 | 100.0% | 47.1% |
| 4200681 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.83 | 71.0 | 6.54e-01 | 93.8% | 91.7% |
| 4376165 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.83 | 71.0 | 6.60e-01 | 95.8% | 95.0% |
| 4931880 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.83 | 73.0 | 6.46e-01 | 100.0% | 78.6% |
| 4653384 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.83 | 70.0 | 6.54e-01 | 95.8% | 96.7% |
| 5006052 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.82 | 71.0 | 6.44e-01 | 95.8% | 84.4% |
| 5069936 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.82 | 73.0 | 4.84e-01 | 100.0% | 44.7% |
| 4361731 | 2.1.1.73 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N | 0.82 | 74.0 | 6.64e-01 | 100.0% | 92.3% |
| 4939170 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.82 | 67.0 | 5.54e-01 | 91.7% | 61.2% |
| 5042160 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.81 | 72.0 | 6.68e-01 | 100.0% | 91.7% |
| 3258467 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.81 | 71.0 | 6.25e-01 | 97.9% | 82.9% |
| 5073041 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.81 | 73.0 | 6.10e-01 | 100.0% | 68.8% |
| 4156740 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.81 | 69.0 | 6.88e-01 | 95.8% | 96.0% |
| 4304764 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.80 | 70.0 | 5.24e-01 | 100.0% | 88.2% |
| 3970949 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.80 | 70.0 | 5.30e-01 | 100.0% | 92.2% |
| 4991825 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 70.0 | 5.93e-01 | 100.0% | 73.8% |
| 4956338 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.79 | 69.0 | 6.41e-01 | 97.9% | 90.0% |
| 5081375 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.79 | 69.0 | 6.13e-01 | 100.0% | 78.6% |
| 390 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.79 | 69.0 | 6.05e-01 | 100.0% | 72.2% |
| 3963655 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.78 | 68.0 | 6.22e-01 | 100.0% | 86.2% |
| 5019244 | 2.1.1.381 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28043 | 0.78 | 67.0 | 5.88e-01 | 100.0% | 98.7% |
| 5044778 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.78 | 67.0 | 4.11e-01 | 97.9% | 18.4% |
| 5039058 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.78 | 68.0 | 6.39e-01 | 100.0% | 88.3% |
| 4221644 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.78 | 68.0 | 6.04e-01 | 100.0% | 77.1% |
| 5077797 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.77 | 69.0 | 6.20e-01 | 100.0% | 83.1% |
| 3587260 | 2.1.1.262 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF31148 | 0.77 | 68.0 | 5.76e-01 | 100.0% | 77.5% |
| 3974652 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.77 | 67.0 | 6.26e-01 | 100.0% | 91.7% |
| 4493460 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.77 | 67.0 | 5.15e-01 | 100.0% | 94.5% |
| 5041943 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 67.0 | 5.60e-01 | 100.0% | 75.3% |
| 4997313 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 67.0 | 5.81e-01 | 100.0% | 82.7% |
| 199611 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.76 | 67.0 | 5.80e-01 | 100.0% | 71.1% |
| 4963308 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 63.0 | 3.83e-01 | 95.8% | 16.7% |
| 4242535 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.76 | 53.0 | 5.70e-01 | 75.0% | 90.0% |
| 5035058 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.76 | 67.0 | 6.05e-01 | 100.0% | 83.1% |
| 5071470 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.76 | 66.0 | 5.90e-01 | 100.0% | 77.1% |
| 5057061 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 66.0 | 5.89e-01 | 100.0% | 77.1% |
| 4440715 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 66.0 | 6.02e-01 | 100.0% | 89.2% |
| 5065712 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.76 | 66.0 | 5.87e-01 | 100.0% | 77.1% |
| 5027166 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.76 | 66.0 | 5.77e-01 | 100.0% | 73.0% |
| 4033331 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.76 | 67.0 | 6.42e-01 | 100.0% | 94.5% |
| 5083197 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.76 | 65.0 | 5.83e-01 | 100.0% | 77.1% |
| 5009353 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.75 | 66.0 | 5.84e-01 | 100.0% | 77.1% |
| 4932278 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 62.0 | 5.85e-01 | 95.8% | 91.7% |
| 3213990 | 2.18.1.0 ↗ | beta barrels › OB-fold › OB domain in putative lipoprotein BF3042-related proteins › OB domain in putative lipoprotein BF3042-related proteins | 0.75 | 61.0 | 5.49e-01 | 93.8% | 84.3% |
| 4962650 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 63.0 | 6.12e-01 | 97.9% | 94.5% |
| 4237702 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 61.0 | 4.67e-01 | 100.0% | 39.1% |
| 370565 | 2.4.1.8 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › FbpC-like_RD | 0.75 | 57.0 | 5.69e-01 | 83.3% | 81.6% |
| 4377440 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 60.0 | 5.79e-01 | 91.7% | 90.9% |
| 5083525 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 64.0 | 3.88e-01 | 100.0% | 17.8% |
| 3968805 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.72 | 61.0 | 5.76e-01 | 100.0% | 86.7% |
| 4331761 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.71 | 61.0 | 4.63e-01 | 97.9% | 98.3% |
| 3944705 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.71 | 59.0 | 5.26e-01 | 100.0% | 70.7% |
| 4047622 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.70 | 59.0 | 4.56e-01 | 95.8% | 95.5% |
| 3711282 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 60.0 | 5.79e-01 | 97.9% | 96.4% |
| 3164387 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.67 | 51.0 | 5.27e-01 | 83.3% | 88.9% |
| 4230177 | 2.8.1.2 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 | 0.58 | 47.0 | 4.30e-01 | 100.0% | 67.1% |
| 3254502 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.56 | 46.0 | 3.81e-01 | 97.9% | 50.5% |
| 5008907 | 259.1.1.2 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e | 0.56 | 44.0 | 3.83e-01 | 100.0% | 87.8% |
| 3231090 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.53 | 38.0 | 3.24e-01 | 81.2% | 68.9% |
D3
medium
residues 204-218_264-345
Domain cluster:
rep: late_expression_factor_4__YP_667910__Neodiprion_abietis_NPV__204507__D219-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 73.8 | 2.00e-20 | 80.4% | 14.1% |
D4
medium
residues 219-263_346-395
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 52.3 | 7.10e-14 | 56.8% | 10.3% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a5hA03 | 6.20.120.40 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 21.0 | 2.65e-01 | 84.2% | 40.3% |
| 6rarI01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.63 | 56.0 | 4.45e-01 | 98.9% | 100.0% |
| 2a6hC05 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.63 | 25.0 | 2.86e-01 | 92.6% | 44.0% |
| 6imjA01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.62 | 54.0 | 4.36e-01 | 97.9% | 100.0% |
| 5towB02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 33.0 | 2.75e-01 | 100.0% | 31.9% |
| 3h41A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 28.0 | 3.29e-01 | 100.0% | 60.3% |
| 2v1rA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 28.0 | 3.27e-01 | 100.0% | 64.2% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 26.0 | 2.94e-01 | 93.7% | 58.3% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 23.0 | 2.90e-01 | 93.7% | 63.2% |
| 2kjzA01 | 3.30.720.120 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.52 | 28.0 | 3.47e-01 | 100.0% | 88.9% |
| 2py5A05 | 4.10.80.20 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 5 | 0.51 | 17.0 | 2.66e-01 | 76.8% | 80.0% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.50 | 41.0 | 3.02e-01 | 92.6% | 95.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3704759 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.70 | 62.0 | 4.67e-01 | 100.0% | 85.8% |
| 4000577 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.66 | 60.0 | 4.38e-01 | 100.0% | 95.7% |
| 4067162 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.66 | 25.0 | 3.14e-01 | 92.6% | 51.7% |
| 5051419 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 24.0 | 3.13e-01 | 90.5% | 54.5% |
| 4668736 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.65 | 59.0 | 4.94e-01 | 100.0% | 90.6% |
| 4682066 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.58 | 24.0 | 2.47e-01 | 96.8% | 36.6% |
| 4505632 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.58 | 23.0 | 2.82e-01 | 92.6% | 52.4% |
| 3425319 | 2.1.1.87 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RPA43_OB | 0.58 | 24.0 | 2.31e-01 | 96.8% | 31.8% |
| 4948250 | 4.1.1.301 ↗ | beta barrels › SH3 › SH3 › SH3 › MJ1316 | 0.55 | 26.0 | 3.10e-01 | 93.7% | 64.6% |
| 4228279 | 55.1.1.1 ↗ | beta barrels › Urease metallochperone UreE-N › Urease metallochperone UreE-N › Urease metallochperone UreE-N › UreE_N | 0.54 | 28.0 | 3.01e-01 | 98.9% | 56.5% |
| 3720043 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.52 | 32.0 | 3.10e-01 | 93.7% | 54.3% |
| 3550019 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.51 | 39.0 | 2.26e-01 | 83.2% | 62.2% |
| 3210421 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.50 | 25.0 | 2.14e-01 | 93.7% | 26.5% |