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lef-8

Euk-Vir

Oryctes_rhinoceros_nudivirus

lef-8__YP_002321375__Oryctes_rhinoceros_nudivirus__92521

Identity

Accession:
YP_002321375 ↗
Protein ID:
lef-8
Kingdom:
euk

Quality

53.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Alphanudivirus› Oryctes_rhinoceros_nudivirus

TaxID: 92521

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-99
PDB
D2 high residues 323-415
PDB
Domain cluster: rep: lef-8__YP_009553422__Tomelloso_virus__2053981__D332-416
D3 medium residues 418-484
PDB
D4 medium residues 584-613_715-839
PDB
D5 medium residues 614-714
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5t8uB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.74 53.0 3.88e-01 74.3% 67.9%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.73 51.0 4.14e-01 72.3% 77.7%
1wqwA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.73 53.0 4.28e-01 75.2% 87.7%
2ddzE00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.73 54.0 4.33e-01 77.2% 94.2%
2p0lA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.72 56.0 4.14e-01 83.2% 90.6%
3l1aA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.72 52.0 4.02e-01 75.2% 81.0%
1vqzA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.71 50.0 3.74e-01 72.3% 75.6%
1r62A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.71 51.0 4.60e-01 75.2% 100.0%
2cg9X01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 40.0 4.02e-01 91.1% 59.0%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.66 52.0 3.90e-01 86.1% 76.9%
4aqzA00 2.60.40.3470 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 52.0 4.67e-01 91.1% 61.6%
5idmA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.65 49.0 4.08e-01 80.2% 93.2%
4bxiA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.63 45.0 3.98e-01 74.3% 67.8%
1g84A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 46.0 4.54e-01 77.2% 87.6%
2cryA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 46.0 4.64e-01 79.2% 89.2%
1xauA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 45.0 4.53e-01 77.2% 89.4%
6ef7A00 2.60.40.4140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 45.0 4.26e-01 78.2% 82.3%
6u6pA01 3.30.1070.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › Cell division topological specificity factor MinE 0.61 35.0 3.95e-01 95.0% 73.1%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 41.0 3.72e-01 92.1% 51.9%
2xg5B01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.60 45.0 4.09e-01 79.2% 97.8%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 4.58e-01 74.3% 98.8%
5swsE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 42.0 4.12e-01 73.3% 89.2%
4r3aA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.60 44.0 4.00e-01 79.2% 73.2%
3hr6A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 45.0 3.93e-01 82.2% 67.5%
3oq3B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 4.28e-01 77.2% 87.4%
4v2bA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 4.25e-01 77.2% 84.0%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.59 43.0 3.12e-01 77.2% 90.5%
1ejfA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 43.0 4.24e-01 79.2% 89.1%
4nzdB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 4.28e-01 78.2% 91.9%
6lynD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 4.31e-01 75.2% 87.4%
1jeyB02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.56 39.0 3.15e-01 72.3% 90.5%
3w1zC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 3.66e-01 74.3% 86.9%
1yjdC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.76e-01 74.3% 85.6%
1nrkA01 3.30.70.1630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 40.0 4.09e-01 75.2% 81.4%
2xdhA00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 39.0 3.55e-01 74.3% 78.3%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 4.03e-01 80.2% 96.8%
3ntvA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 30.0 2.42e-01 92.1% 27.1%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3386233 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.72 51.0 4.26e-01 74.3% 90.3%
3382396 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 49.0 5.26e-01 74.3% 100.0%
3324935 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.66 44.0 4.47e-01 91.1% 68.0%
4961500 11.1.1.131 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EB_dh 0.66 49.0 3.86e-01 78.2% 71.0%
3486551 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 46.0 4.35e-01 72.3% 73.3%
3734856 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.65 43.0 3.96e-01 91.1% 52.3%
3652333 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.64 44.0 4.45e-01 90.1% 69.9%
3308868 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 44.0 4.42e-01 72.3% 100.0%
4945188 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 48.0 4.64e-01 80.2% 87.8%
4538358 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.63 39.0 3.75e-01 91.1% 53.0%
3425671 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.63 43.0 4.34e-01 91.1% 70.0%
3704023 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.63 44.0 4.18e-01 73.3% 78.3%
3533165 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 45.0 4.31e-01 76.2% 90.0%
3616441 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.62 43.0 4.06e-01 91.1% 60.0%
3041546 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.61 44.0 4.42e-01 76.2% 83.0%
3880055 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 45.0 4.23e-01 79.2% 91.2%
4942423 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 44.0 3.52e-01 78.2% 76.6%
3648159 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 41.0 3.72e-01 70.3% 76.9%
3511363 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 43.0 4.24e-01 77.2% 89.1%
3889151 11.1.1.587 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR1-3_N_Ig-like 0.58 43.0 4.11e-01 78.2% 75.0%
3245484 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 4.07e-01 81.2% 87.4%
3434296 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 43.0 4.23e-01 92.1% 71.8%
3663152 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.58 42.0 3.69e-01 90.1% 51.3%
3497506 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 41.0 3.94e-01 75.2% 91.7%
4389823 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.58 40.0 3.68e-01 91.1% 54.1%
4168408 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.57 43.0 3.84e-01 91.1% 57.8%
4955022 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 3.81e-01 75.2% 86.9%
4940582 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 42.0 4.04e-01 77.2% 89.6%
3649748 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 42.0 3.60e-01 91.1% 50.3%
3294459 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 42.0 4.15e-01 91.1% 74.3%
3632843 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 46.0 3.97e-01 91.1% 56.8%
991644 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 40.0 3.53e-01 73.3% 81.1%
3863596 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.55 41.0 3.72e-01 79.2% 70.7%
973647 11.13.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.55 41.0 3.18e-01 79.2% 72.0%
3497563 3468.1.1.0 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain 0.52 39.0 3.54e-01 79.2% 92.6%
3480732 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 38.0 3.77e-01 79.2% 76.4%
3846483 3246.1.1.1 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAM_CR 0.51 39.0 3.78e-01 82.2% 78.3%
3484617 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.51 39.0 3.25e-01 80.2% 74.1%
4881486 11.1.1.220 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › UL141 0.51 39.0 3.07e-01 82.2% 51.6%