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lef-8

Euk-Vir

Clostera_anastomosis_granulovirus_B

lef-8__YP_009506057__Clostera_anastomosis_granulovirus_B__1986290

Identity

Accession:: YP_009506057 ↗
Protein ID:: lef-8
Kingdom:: euk

Quality

73.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Clostera_anastomosis_granulovirus_B

TaxID: 1986290

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-97_222-306

PDB

Domain cluster: rep: lef-8__YP_009513164__Agrotis_segetum_granulovirus__10464__D3-99_217-314

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	110.1	1.40e-31	52.2%	13.3%
PF04941.18	LEF-8	80.5	1.30e-22	47.2%	12.3%

D2 high residues 102-205

PDB

Domain cluster: rep: LEF-8__YP_009345850__Mythimna_unipuncta_granulovirus_B__2169746__D102-211

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	168.4	3.50e-49	100.0%	14.0%

D3 high residues 600-614_634-729

PDB

Domain cluster: rep: late_expression_factor-8__YP_025188__Neodiprion_sertifer_nucleopolyhedrovirus__111874__D585-690

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	116.8	1.40e-33	100.0%	15.3%

D4 medium residues 362-495

PDB

Domain cluster: rep: Late_expression_facto_8__YP_009666455__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D385-515

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	113.7	1.20e-32	99.2%	15.3%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4k3bA01	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.58	27.0	3.49e-01	84.3%	79.7%
4x0qA03	3.30.70.370	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.50	32.0	3.22e-01	100.0%	60.1%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5062681	4961.1.1.1 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4	0.72	43.0	5.33e-01	70.9%	94.1%
3231491	4961.1.1.1 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4	0.69	45.0	5.24e-01	71.6%	92.6%
3513013	4961.1.1.2 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4	0.66	43.0	5.02e-01	70.1%	92.6%
3492372	4961.1.1.2 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4	0.63	43.0	4.70e-01	70.1%	92.7%
4948672	4961.1.1.1 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4	0.62	50.0	4.93e-01	85.1%	86.0%
4293469	4232.1.1.1 ↗	few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28	0.55	28.0	3.88e-01	98.5%	100.0%
3627479	221.1.1.4 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1	0.52	28.0	2.91e-01	73.1%	53.6%

D5 medium residues 573-598_733-836

PDB

Domain cluster: rep: KU935715.1__AND75470.1__ME3_309__00309__D264-326_420-534

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	41.9	6.30e-11	23.1%	4.1%
PF04941.18	LEF-8	32.0	6.00e-08	20.8%	3.6%