lef-8

Euk-Vir

Agrotis_segetum_granulovirus

lef-8__YP_009513164__Agrotis_segetum_granulovirus__10464

Identity

73.0 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Agrotis_segetum_granulovirus

TaxID: 10464

View cluster (46 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-99_217-314

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	93.7	1.40e-26	50.3%	13.8%
PF04941.18	LEF-8	106.9	1.40e-30	49.7%	13.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4585275	4010.1.1.2 ↗	a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	0.60	56.0	4.86e-01	100.0%	72.4%

D2 high residues 106-203

PDB

Domain cluster: rep: LEF-8__YP_009345850__Mythimna_unipuncta_granulovirus_B__2169746__D102-211

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	156.1	1.80e-45	100.0%	13.2%

D3 high residues 357-400_416-508

PDB

Domain cluster: rep: Late_expression_facto_8__YP_009666455__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D385-515

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	127.2	9.50e-37	99.3%	16.2%

D4 high residues 612-728

PDB

Domain cluster: rep: late_expression_factor-8__YP_025188__Neodiprion_sertifer_nucleopolyhedrovirus__111874__D585-690

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	121.0	7.20e-35	100.0%	15.5%

D5 medium residues 315-348_509-552

PDB

D6 medium residues 584-611_730-821

PDB

Domain cluster: rep: KU935715.1__AND75470.1__ME3_309__00309__D264-326_420-534

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	36.2	3.20e-09	26.7%	4.0%
PF04941.18	LEF-8	35.2	6.60e-09	25.0%	4.0%

D7 medium residues 833-883

PDB