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lef-8

Euk-Vir

Cryptophlebia_peltastica_nucleopolyhedrovirus

lef-8__YP_010086908__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025

Identity

Accession:: YP_010086908 ↗
Protein ID:: lef-8
Kingdom:: euk

Quality

74.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Cryptophlebia_peltastica_nucleopolyhedrovirus

TaxID: 2304025

Cluster

View cluster (46 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 610-719

PDB

Domain cluster: rep: late_expression_factor-8__YP_025188__Neodiprion_sertifer_nucleopolyhedrovirus__111874__D585-690

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	98.5	4.70e-28	100.0%	14.8%

D2 medium residues 1-99_225-290

PDB

Domain cluster: rep: lef-8__YP_009513164__Agrotis_segetum_granulovirus__10464__D3-99_217-314

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	95.0	5.40e-27	58.2%	13.3%
PF04941.18	LEF-8	48.4	7.00e-13	42.4%	8.6%

D3 medium residues 104-208

PDB

Domain cluster: rep: LEF-8__YP_009345850__Mythimna_unipuncta_granulovirus_B__2169746__D102-211

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	158.4	3.70e-46	100.0%	14.1%

D4 medium residues 365-425_446-456

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	37.8	1.10e-09	98.6%	7.7%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4izzB03	1.10.10.1670	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain	0.62	38.0	3.24e-01	84.7%	38.3%
2co5A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.60	33.0	3.04e-01	79.2%	42.4%
3g3zA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	31.0	3.27e-01	76.4%	57.8%
1s3jA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	29.0	3.11e-01	77.8%	59.4%
4g6zA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.53	48.0	3.14e-01	100.0%	46.2%
3ll7A02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.51	39.0	2.98e-01	84.7%	95.8%
6b1pA02	3.90.800.10	Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3	0.51	43.0	4.04e-01	93.1%	100.0%
1nzjA02	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.51	41.0	3.39e-01	90.3%	69.6%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3637397	101.1.2.147 ↗	alpha arrays › HTH › HTH › winged helix domain › ORC4_C	0.63	41.0	3.17e-01	87.5%	31.8%
3483524	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.63	49.0	3.33e-01	88.9%	69.8%
2697	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.63	33.0	3.31e-01	80.6%	49.4%
4107525	301.1.1.2 ↗	a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3	0.56	40.0	3.74e-01	76.4%	100.0%
5024118	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.55	43.0	3.15e-01	88.9%	77.8%
3181809	101.1.2.147 ↗	alpha arrays › HTH › HTH › winged helix domain › ORC4_C	0.51	41.0	3.26e-01	86.1%	48.2%
3250568	101.1.2.151 ↗	alpha arrays › HTH › HTH › winged helix domain › COR	0.51	36.0	3.38e-01	87.5%	60.0%

D5 medium residues 426-445_457-503

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	42.9	3.00e-11	100.0%	9.0%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1fhoA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.64	43.0	3.58e-01	70.1%	77.3%
4hdoA03	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.60	40.0	3.67e-01	70.1%	82.6%
5ja1B00	3.90.820.10	Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id	0.54	33.0	3.32e-01	70.1%	60.6%
2y27B01	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.53	41.0	2.73e-01	89.6%	74.2%
3vkwA01	3.30.450.420	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.51	40.0	3.06e-01	85.1%	79.3%
5xc5A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.50	35.0	2.72e-01	73.1%	96.4%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4046934	4232.1.1.1 ↗	few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28	0.67	44.0	5.20e-01	80.6%	100.0%
4203620	4232.1.1.0 ↗	few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28	0.64	40.0	4.73e-01	77.6%	100.0%
4154378	4232.1.1.1 ↗	few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28	0.63	44.0	4.55e-01	74.6%	96.9%
3214695	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.61	41.0	3.77e-01	70.1%	94.4%
4938855	5103.1.1.0 ↗	a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380	0.54	45.0	3.98e-01	95.5%	92.0%
3980030	7523.1.1.15 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate	0.52	43.0	3.76e-01	95.5%	85.7%
3712235	6171.1.1.0 ↗	alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases	0.51	44.0	3.34e-01	100.0%	55.3%
5000407	246.2.1.1 ↗	a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos	0.50	41.0	2.94e-01	98.5%	37.2%

D6 medium residues 561-609_720-806

PDB

Domain cluster: rep: KU935715.1__AND75470.1__ME3_309__00309__D264-326_420-534

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	61.3	8.20e-17	37.5%	6.6%
PF04941.18	LEF-8	48.4	6.90e-13	25.7%	4.7%

D7 medium residues 830-879

PDB