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lef-9

Euk-Vir

Spodoptera_frugiperda_granulovirus

lef-9__YP_009121900__Spodoptera_frugiperda_granulovirus__307454

Identity

Accession:: YP_009121900 ↗
Protein ID:: lef-9
Kingdom:: euk

Quality

68.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Spodoptera_frugiperda_granulovirus

TaxID: 307454

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-201

PDB

D2 high residues 218-334

PDB

Domain cluster: rep: DNA-dependent_RNA_polymerase_subunit_rpo147__YP_232980__Vaccinia_virus__10245__D277-311_370-443

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05094.18 best	LEF-9	227.3	4.70e-67	100.0%	23.7%

D3 high residues 353-444

PDB

Domain cluster: rep: late_expression_factor_9__YP_009552184__Malacosoma_neustria_nucleopolyhedrovirus__38012__D322-387

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05094.18 best	LEF-9	117.5	9.40e-34	100.0%	18.9%

D4 medium residues 490-543

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05094.18 best	LEF-9	67.7	1.20e-18	94.4%	10.3%

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1yaxB00	3.30.450.140	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PhoQ sensor domain	0.62	47.0	3.50e-01	81.5%	83.6%
1rm6A05	3.30.365.10	Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain	0.60	42.0	2.98e-01	74.1%	25.4%
3n6xA02	3.40.50.11290	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.58	41.0	3.39e-01	74.1%	81.8%
2c1iA02	3.90.640.30	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 ›	0.57	41.0	3.70e-01	77.8%	57.1%
7atrA01	3.10.105.10	Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3	0.56	31.0	1.99e-01	81.5%	10.7%
3au2A04	3.30.210.10	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain	0.56	39.0	3.70e-01	74.1%	63.1%
7x4qA01	3.30.460.10	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2	0.56	44.0	3.28e-01	90.7%	95.4%
1ffvB03	3.30.365.10	Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain	0.56	40.0	2.94e-01	79.6%	31.9%
4a17H02	3.30.60.300	Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 ›	0.55	24.0	2.78e-01	70.4%	51.3%
3etvA02	1.20.58.2230	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Retrograde transport protein Dsl1, N-terminal domain	0.55	44.0	3.06e-01	100.0%	90.9%
4n06A01	3.100.10.20	Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain	0.54	37.0	3.40e-01	75.9%	93.9%
2bcqA04	3.30.210.10	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain	0.53	37.0	3.49e-01	74.1%	79.1%
3draB00	1.50.10.20	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.52	43.0	2.70e-01	100.0%	32.1%
3d0sA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	36.0	3.25e-01	74.1%	91.3%
2vepA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.52	43.0	2.82e-01	92.6%	53.8%
3gmiA02	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.52	40.0	2.71e-01	87.0%	33.8%
1ekgA00	3.30.920.10	Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY	0.51	35.0	2.71e-01	72.2%	61.3%
3dupA02	3.30.750.160	Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA ›	0.51	31.0	2.53e-01	70.4%	28.3%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3259134	109.2.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid	0.62	48.0	2.99e-01	85.2%	33.0%
3521805	376.1.1.20 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX	0.60	42.0	3.76e-01	72.2%	64.0%
3579412	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.59	37.0	3.55e-01	72.2%	52.3%
3892822	376.1.1.27 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5	0.59	39.0	3.62e-01	70.4%	66.7%
3793075	214.1.1.1 ↗	a+b two layers › SH2 › SH2 › SH2 › SH2	0.58	39.0	3.02e-01	72.2%	45.2%
3406332	273.1.1.1 ↗	a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP	0.58	45.0	3.04e-01	88.9%	40.9%
4951202	316.1.1.23 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb	0.54	37.0	2.73e-01	72.2%	26.5%
4607010	5104.1.1.1 ↗	a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1	0.53	39.0	3.08e-01	81.5%	58.0%
3999460	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.52	37.0	3.51e-01	75.9%	67.7%
1807407	102.8.1.0 ↗	alpha arrays › HhH/H2TH › UPF0348 protein MJ0951 C-terminal domain › UPF0348 protein MJ0951 C-terminal domain	0.52	40.0	2.60e-01	87.0%	27.3%