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lef1

Euk-Vir

Oxyplax_ochracea_nucleopolyhedrovirus

lef1__YP_009666623__Oxyplax_ochracea_nucleopolyhedrovirus__2083176

Identity

Accession:
YP_009666623 ↗
Protein ID:
lef1
Kingdom:
euk

Quality

88.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Oxyplax_ochracea_nucleopolyhedrovirus

TaxID: 2083176

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 75-106_121-193_220-231
PDB
Domain cluster: rep: LEF-1__YP_009552675__Operophtera_brumata_nucleopolyhedrovirus__1046267__D79-105_127-201
D2 medium residues 1-74_107-120_194-219
PDB
Domain cluster: rep: IMGVR_UViG_3300025073_001004-3300025073-Ga0208245_100042257__D1-82_170-181
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.87 81.0 5.48e-01 100.0% 84.0%
4bpuC00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.86 81.0 5.51e-01 100.0% 84.7%
1g71A01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.84 79.0 6.05e-01 100.0% 80.1%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 40.0 4.84e-01 95.6% 100.0%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.57 30.0 3.56e-01 74.6% 75.0%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.56 39.0 4.03e-01 71.1% 88.8%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 39.0 3.21e-01 70.2% 90.7%
2lw3A00 2.60.40.2880 Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain 0.53 34.0 3.77e-01 100.0% 82.2%
2zuoA08 2.30.30.620 Mainly Beta › Roll › SH3 type barrels. › 0.53 28.0 3.67e-01 81.6% 100.0%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.52 42.0 4.40e-01 93.9% 98.0%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.09e-01 73.7% 91.6%
1oeyL00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 32.0 3.43e-01 84.2% 71.4%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 43.0 3.53e-01 100.0% 95.4%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946939 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.89 71.0 5.69e-01 82.5% 90.0%
3692641 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.88 83.0 6.01e-01 100.0% 75.6%
4946875 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.87 83.0 6.10e-01 100.0% 89.8%
5029237 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.87 83.0 6.24e-01 100.0% 78.8%
3518002 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.87 82.0 5.74e-01 100.0% 71.0%
5000686 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.87 82.0 5.94e-01 100.0% 90.2%
3591528 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.87 82.0 5.95e-01 100.0% 81.1%
3921299 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.87 82.0 5.79e-01 100.0% 69.0%
4442634 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.87 82.0 5.91e-01 100.0% 91.4%
4038221 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.87 82.0 6.24e-01 100.0% 89.2%
4085259 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.86 82.0 6.03e-01 100.0% 89.1%
5010675 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.86 82.0 6.06e-01 100.0% 91.5%
4978273 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.86 81.0 5.98e-01 100.0% 89.4%
4425840 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.86 81.0 5.67e-01 100.0% 90.9%
5051647 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.85 81.0 6.14e-01 100.0% 84.6%
5060983 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.85 80.0 5.82e-01 100.0% 85.3%
4554731 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.85 80.0 6.20e-01 100.0% 84.8%
4552974 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.85 80.0 6.11e-01 100.0% 89.2%
4274062 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.84 79.0 5.97e-01 100.0% 80.8%
4650634 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.84 79.0 5.96e-01 100.0% 79.2%
4212379 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.83 78.0 5.88e-01 100.0% 87.8%
5044094 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.83 78.0 6.06e-01 100.0% 86.5%
4942021 862.1.1.5 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.83 78.0 5.72e-01 100.0% 77.1%
3603386 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.83 78.0 5.58e-01 100.0% 90.8%
4956744 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.83 77.0 5.81e-01 100.0% 89.8%
5069642 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.83 78.0 6.11e-01 100.0% 88.2%
5030283 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.83 77.0 5.68e-01 100.0% 78.2%
5027070 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.82 69.0 5.59e-01 88.6% 94.6%
5027616 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.82 77.0 5.75e-01 100.0% 74.2%
5037338 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.82 77.0 5.71e-01 100.0% 81.1%
5054620 862.1.1.5 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.81 75.0 5.69e-01 100.0% 78.0%
5058297 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.80 75.0 5.49e-01 100.0% 83.6%
3238197 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.80 62.0 5.25e-01 81.6% 94.4%
80936 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.76 59.0 5.09e-01 82.5% 90.9%
3991455 822.2.1.1 ↗ a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.68 35.0 4.66e-01 94.7% 100.0%
3747259 822.2.1.1 ↗ a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.60 31.0 3.98e-01 78.9% 91.7%
224066 822.3.1.1 ↗ a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.56 30.0 3.51e-01 75.4% 74.0%
3468988 1.1.5.30 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.54 37.0 3.15e-01 70.2% 97.4%
3172253 2004.1.1.212 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Microtub_bd 0.53 47.0 3.27e-01 100.0% 29.1%
5078886 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 40.0 4.06e-01 98.2% 82.7%
3593442 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 36.0 3.72e-01 81.6% 75.2%
4168173 281.1.1.1 ↗ a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II 0.52 45.0 3.85e-01 100.0% 89.8%
3398228 221.7.1.1 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › E2_bind 0.52 38.0 4.04e-01 97.4% 88.0%
4259223 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.52 45.0 3.61e-01 97.4% 89.4%
3920703 10.12.1.40 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 0.51 43.0 3.14e-01 93.9% 53.8%
3475431 133.1.1.0 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) 0.50 38.0 3.06e-01 80.7% 59.6%
5041352 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 34.0 3.32e-01 98.2% 62.4%
3958897 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.50 40.0 4.00e-01 86.0% 85.8%