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lef4
Euk-VirEuproctis_pseudoconspersa_nucleopolyhedrovirus
lef4__YP_002854687__Euproctis_pseudoconspersa_nucleopolyhedrovirus__307467
Identity
- Accession:
- YP_002854687 ↗
- Protein ID:
- lef4
- Kingdom:
- euk
Quality
78.6
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Euproctis_pseudoconspersa_nucleopolyhedrovirus
TaxID: 307467
Cluster
View cluster (54 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 215-407
Domain cluster:
rep: late_expression_factor_4__YP_667910__Neodiprion_abietis_NPV__204507__D219-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 257.7 | 3.30e-76 | 100.0% | 40.0% |
D2
high
residues 411-465
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 38.3 | 1.20e-09 | 100.0% | 11.2% |
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3udfA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 64.0 | 5.36e-01 | 100.0% | 80.0% |
| 3g5oC00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.72 | 49.0 | 4.18e-01 | 70.9% | 93.1% |
| 2rcnA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 64.0 | 6.23e-01 | 100.0% | 90.2% |
| 4mtnA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 59.0 | 5.67e-01 | 92.7% | 96.8% |
| 3k0yA01 | 2.40.50.500 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain | 0.71 | 61.0 | 5.87e-01 | 100.0% | 95.4% |
| 4ifdI02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 62.0 | 4.60e-01 | 100.0% | 66.0% |
| 4pz7A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.70 | 62.0 | 4.65e-01 | 100.0% | 58.4% |
| 2qw7C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.70 | 62.0 | 5.18e-01 | 100.0% | 85.3% |
| 2k5vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 60.0 | 5.04e-01 | 100.0% | 79.6% |
| 3m7nA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 60.0 | 5.21e-01 | 100.0% | 91.9% |
| 2id0A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 59.0 | 5.35e-01 | 100.0% | 74.4% |
| 7zhhA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 58.0 | 5.56e-01 | 100.0% | 100.0% |
| 4gnxA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 56.0 | 4.67e-01 | 100.0% | 55.6% |
| 3nqiA01 | 2.40.50.500 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain | 0.65 | 55.0 | 5.30e-01 | 100.0% | 93.8% |
| 4rg1A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 56.0 | 5.37e-01 | 100.0% | 90.8% |
| 1ze3D00 | 3.10.20.410 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain | 0.63 | 43.0 | 3.37e-01 | 70.9% | 75.0% |
| 3fd4A00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.62 | 46.0 | 3.52e-01 | 100.0% | 32.9% |
| 3sreA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.62 | 51.0 | 3.14e-01 | 92.7% | 25.2% |
| 4b0eD00 | 3.10.20.410 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain | 0.61 | 41.0 | 3.43e-01 | 70.9% | 86.0% |
| 2x8xX01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.60 | 41.0 | 3.77e-01 | 72.7% | 97.4% |
| 1b3qA04 | 2.40.50.180 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 | 0.59 | 49.0 | 4.74e-01 | 96.4% | 96.8% |
| 1k3rA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 47.0 | 4.63e-01 | 100.0% | 91.5% |
| 3dteA01 | 1.10.10.2910 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 41.0 | 3.23e-01 | 92.7% | 37.6% |
| 1gzeA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.55 | 45.0 | 3.16e-01 | 100.0% | 39.1% |
| 2qdlA02 | 2.40.50.180 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 | 0.53 | 44.0 | 4.00e-01 | 100.0% | 80.7% |
| 4bs9A04 | 3.30.40.250 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.53 | 45.0 | 3.93e-01 | 100.0% | 90.0% |
| 2h2tB01 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.52 | 39.0 | 3.21e-01 | 100.0% | 41.4% |
| 6o38A02 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 41.0 | 3.57e-01 | 100.0% | 55.4% |
| 1byfA00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.51 | 41.0 | 3.33e-01 | 100.0% | 47.2% |
| 7jptA02 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.50 | 41.0 | 3.36e-01 | 100.0% | 48.3% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4606649 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.81 | 73.0 | 6.83e-01 | 100.0% | 95.6% |
| 3980538 | 2.7.1.1 ↗ | beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V | 0.74 | 66.0 | 5.96e-01 | 100.0% | 92.0% |
| 5023741 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 61.0 | 6.39e-01 | 96.4% | 100.0% |
| 4261411 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 66.0 | 5.39e-01 | 100.0% | 60.0% |
| 3719891 | 2.1.1.28 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C | 0.73 | 64.0 | 5.06e-01 | 100.0% | 67.0% |
| 5071570 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 64.0 | 5.62e-01 | 100.0% | 80.0% |
| 3539840 | 2.1.1.188 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 | 0.71 | 62.0 | 5.40e-01 | 100.0% | 95.3% |
| 5064412 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 61.0 | 5.56e-01 | 100.0% | 94.7% |
| 4002328 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 62.0 | 5.73e-01 | 100.0% | 87.1% |
| 3700732 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 60.0 | 5.10e-01 | 100.0% | 76.8% |
| 3240790 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 60.0 | 5.70e-01 | 98.2% | 100.0% |
| 3889659 | 2.1.1.188 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 | 0.69 | 59.0 | 5.13e-01 | 100.0% | 92.2% |
| 4968971 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 60.0 | 6.02e-01 | 100.0% | 96.4% |
| 5082388 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 59.0 | 4.51e-01 | 100.0% | 53.3% |
| 4162388 | 2.1.1.224 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 | 0.69 | 59.0 | 4.54e-01 | 100.0% | 49.2% |
| 5049738 | 2.1.1.94 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C | 0.68 | 59.0 | 5.23e-01 | 98.2% | 91.3% |
| 4999027 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 55.0 | 5.07e-01 | 94.5% | 100.0% |
| 175113 | 2.1.1.28 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C | 0.67 | 58.0 | 4.34e-01 | 100.0% | 65.8% |
| 3326221 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 58.0 | 4.88e-01 | 98.2% | 94.7% |
| 3976838 | 2.1.1.295 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › YqiJ_OB | 0.67 | 57.0 | 5.11e-01 | 100.0% | 78.8% |
| 3227986 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 57.0 | 5.06e-01 | 100.0% | 88.7% |
| 4956417 | 259.1.1.2 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e | 0.65 | 56.0 | 4.87e-01 | 98.2% | 97.6% |
| 4979310 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 56.0 | 5.10e-01 | 100.0% | 74.7% |
| 1401257 | 2.1.1.21 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 | 0.64 | 56.0 | 4.74e-01 | 100.0% | 62.8% |
| 4956483 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.64 | 55.0 | 3.35e-01 | 94.5% | 15.4% |
| 3925245 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.64 | 54.0 | 4.87e-01 | 100.0% | 73.8% |
| 4990107 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 55.0 | 5.00e-01 | 98.2% | 73.3% |
| 4946332 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 54.0 | 5.28e-01 | 96.4% | 98.3% |
| 3968414 | 4212.1.1.1 ↗ | beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N | 0.64 | 43.0 | 3.44e-01 | 70.9% | 82.7% |
| 4964634 | 2.1.1.373 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF7526 | 0.63 | 53.0 | 4.57e-01 | 100.0% | 98.9% |
| 4008827 | 4212.1.1.1 ↗ | beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N | 0.63 | 43.0 | 3.35e-01 | 70.9% | 69.2% |
| 5047472 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 53.0 | 5.07e-01 | 94.5% | 87.7% |
| 2544590 | 2.1.1.58 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF35_N | 0.62 | 52.0 | 4.19e-01 | 100.0% | 57.6% |
| 3398924 | 221.1.1.42 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › GABP-alpha | 0.62 | 52.0 | 4.79e-01 | 98.2% | 98.7% |
| 1495181 | 3940.1.1.1 ↗ | a+b two layers › Spliceosomal helicase Aquarius insert domain › Spliceosomal helicase Aquarius insert domain › Spliceosomal helicase Aquarius insert domain › Aquarius_N_3rd | 0.62 | 52.0 | 4.87e-01 | 100.0% | 76.8% |
| 3494356 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 51.0 | 4.32e-01 | 98.2% | 87.0% |
| 3743534 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.62 | 52.0 | 4.52e-01 | 100.0% | 67.8% |
| 3208255 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 50.0 | 2.76e-01 | 100.0% | 5.7% |
| 4646733 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.60 | 50.0 | 4.26e-01 | 100.0% | 99.0% |
| 3980689 | 4212.1.1.1 ↗ | beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N | 0.60 | 41.0 | 3.19e-01 | 70.9% | 70.4% |
| 3613411 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.59 | 50.0 | 3.73e-01 | 100.0% | 66.7% |
| 3782755 | 109.4.1.3316 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29173, PF29177 | 0.56 | 43.0 | 2.63e-01 | 92.7% | 13.4% |
| 3933981 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.56 | 47.0 | 3.58e-01 | 100.0% | 40.0% |
| 4976821 | 325.1.8.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N | 0.55 | 47.0 | 4.72e-01 | 100.0% | 94.5% |
| 3315718 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.54 | 45.0 | 3.86e-01 | 100.0% | 98.0% |
| 5015075 | 221.12.1.0 ↗ | a+b two layers › beta-Grasp | 0.54 | 43.0 | 4.27e-01 | 94.5% | 100.0% |
| 4403517 | 325.1.8.6 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N_2 | 0.54 | 44.0 | 4.44e-01 | 100.0% | 92.7% |
| 4946967 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.52 | 43.0 | 4.39e-01 | 100.0% | 94.5% |
| 4954547 | 237.1.1.8 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox | 0.52 | 39.0 | 2.86e-01 | 92.7% | 36.0% |
| 4943889 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.51 | 41.0 | 4.32e-01 | 96.4% | 100.0% |
| 3900658 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.51 | 41.0 | 3.21e-01 | 100.0% | 37.3% |
| 3198376 | 325.1.8.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › Rrp40_N | 0.51 | 44.0 | 4.08e-01 | 98.2% | 97.1% |
| 3639134 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.50 | 43.0 | 4.06e-01 | 100.0% | 94.3% |
D3
medium
residues 1-16_51-102_186-211
Domain cluster:
rep: late_expression_factor_4__YP_009552205__Malacosoma_neustria_nucleopolyhedrovirus__38012__D1-10_35-107_124-149
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 36.1 | 5.60e-09 | 64.9% | 10.7% |
D4
medium
residues 17-50_103-185
Domain cluster:
rep: lef-4__YP_009112642__Agrotis_segetum_nucleopolyhedrovirus_B__1580580__D13-45_94-204
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 113.3 | 2.10e-32 | 72.7% | 18.6% |
| PF05098.19 | LEF-4 | 35.4 | 9.00e-09 | 29.9% | 7.4% |