←Back to structures

lef8

Euk-Vir

Euproctis_pseudoconspersa_nucleopolyhedrovirus

lef8__YP_002854631__Euproctis_pseudoconspersa_nucleopolyhedrovirus__307467

Identity

Accession:: YP_002854631 ↗
Protein ID:: lef8
Kingdom:: euk

Quality

76.4 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Euproctis_pseudoconspersa_nucleopolyhedrovirus

TaxID: 307467

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 106-209

PDB

Domain cluster: rep: LEF-8__YP_009345850__Mythimna_unipuncta_granulovirus_B__2169746__D102-211

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	157.9	5.10e-46	100.0%	14.0%

D2 high residues 383-520

PDB

Domain cluster: rep: Late_expression_facto_8__YP_009666455__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D385-515

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	102.9	2.20e-29	100.0%	17.5%

D3 high residues 619-731

PDB

Domain cluster: rep: late_expression_factor-8__YP_025188__Neodiprion_sertifer_nucleopolyhedrovirus__111874__D585-690

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	109.1	2.90e-31	100.0%	15.2%

D4 high residues 843-885

PDB

D5 medium residues 1-102_225-248_276-316

PDB

Domain cluster: rep: lef-8__YP_009513164__Agrotis_segetum_granulovirus__10464__D3-99_217-314

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	100.4	1.20e-28	62.9%	13.7%
PF04941.18	LEF-8	38.2	8.20e-10	39.5%	9.9%

D6 medium residues 214-224_317-380

PDB

D7 medium residues 541-591

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	43.9	1.60e-11	100.0%	6.7%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1hv9A01	3.90.550.10	Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	0.60	44.0	3.00e-01	84.3%	79.5%
4hea600	3.40.50.12280	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.57	44.0	3.33e-01	96.1%	91.9%
3gk5A00	3.40.250.10	Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain	0.56	40.0	3.31e-01	78.4%	67.0%
1dekA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.52	35.0	2.85e-01	72.5%	58.5%
4powA02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.52	39.0	3.07e-01	84.3%	68.1%
1urhA02	3.40.250.10	Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain	0.51	37.0	2.97e-01	82.4%	87.0%
3tshA01	3.30.43.10	Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	0.50	33.0	2.82e-01	70.6%	61.4%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3404837	7585.1.1.0 ↗	a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins	0.60	41.0	2.96e-01	70.6%	54.8%
4055211	2007.2.5.1 ↗	a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese	0.53	38.0	2.97e-01	78.4%	58.5%
1842578	1094.1.1.1 ↗	a/b three-layered sandwiches › Polycomb protein Eed insertion domain › Polycomb protein Eed insertion domain › Polycomb protein Eed insertion domain › PRC2_EED_ins	0.53	39.0	3.39e-01	82.4%	70.9%
2674113	7523.1.1.0 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II	0.50	40.0	3.32e-01	88.2%	63.0%
4622340	2006.1.3.2 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim	0.50	38.0	2.98e-01	90.2%	57.7%

D8 medium residues 592-618_733-834

PDB

Domain cluster: rep: KU935715.1__AND75470.1__ME3_309__00309__D264-326_420-534

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	45.2	6.30e-12	26.4%	4.2%
PF04941.18	LEF-8	28.4	7.80e-07	21.7%	3.7%