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lef8

Euk-Vir

Hemileuca_sp._nucleopolyhedrovirus

lef8__YP_008378253__Hemileuca_sp._nucleopolyhedrovirus__1367203

Identity

Accession:: YP_008378253 ↗
Protein ID:: lef8
Kingdom:: euk

Quality

70.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Hemileuca_sp._nucleopolyhedrovirus

TaxID: 1367203

Cluster

View cluster (46 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-106_220-243_331-358_385-397

PDB

Domain cluster: rep: lef-8__YP_009513164__Agrotis_segetum_granulovirus__10464__D3-99_217-314

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	123.4	1.40e-35	72.5%	14.9%
PF04941.18	LEF-8	28.6	6.40e-07	35.7%	8.9%

D2 medium residues 107-208

PDB

Domain cluster: rep: LEF-8__YP_009345850__Mythimna_unipuncta_granulovirus_B__2169746__D102-211

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	154.6	5.00e-45	100.0%	13.7%

D3 medium residues 398-466_533-607

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	60.3	1.70e-16	56.2%	9.7%
PF04941.18	LEF-8	83.4	1.70e-23	49.3%	9.4%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2jz6A01	2.30.170.40	Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24	0.65	25.0	4.10e-01	70.1%	100.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3593642	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.58	30.0	3.60e-01	79.2%	73.7%
3529581	103.1.1.67 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UPF0515	0.56	19.0	3.34e-01	71.5%	97.8%
4932697	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	21.0	2.92e-01	75.7%	73.8%

D4 medium residues 608-624_657-832

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04941.18 best	LEF-8	230.3	6.50e-68	100.0%	27.0%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2cg9X01	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.68	29.0	3.91e-01	85.5%	74.0%
6iomB01	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.64	20.0	3.25e-01	80.8%	71.4%
4feiA00	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.62	28.0	3.89e-01	82.4%	81.4%
3glaA00	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.62	30.0	4.05e-01	82.4%	89.7%
4ydzA00	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.60	29.0	3.37e-01	84.5%	62.2%
3jafA01	2.70.170.10	Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain	0.55	33.0	3.20e-01	90.2%	50.7%
2bkyX00	3.30.110.20	Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain	0.52	25.0	3.64e-01	85.5%	100.0%
2k4qA00	4.10.410.40	Few Secondary Structures › Irregular › Factor Xa Inhibitor ›	0.52	29.0	3.18e-01	83.9%	66.0%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3667432	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.73	28.0	4.05e-01	87.0%	73.7%
3509551	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.66	29.0	4.16e-01	81.9%	90.6%
3586352	872.3.1.5 ↗	a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2	0.65	30.0	4.12e-01	80.8%	82.9%
4328537	812.1.1.1 ↗	a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE	0.64	28.0	4.19e-01	86.0%	94.1%
3648159	319.1.1.1 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20	0.63	32.0	3.88e-01	87.6%	71.5%
3842474	382.1.1.1 ↗	few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6	0.63	22.0	2.96e-01	89.6%	58.1%
3213160	11.12.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like	0.61	32.0	3.34e-01	90.2%	51.4%
3253360	319.1.1.1 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20	0.58	31.0	3.55e-01	85.5%	67.8%
3434296	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.58	34.0	4.30e-01	89.6%	98.2%
3992645	273.1.1.0 ↗	a+b three layers › PR-1-like › PR-1-like › PR-1-like	0.58	29.0	3.29e-01	90.2%	59.7%
3389007	11.12.1.1 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD	0.57	32.0	3.23e-01	90.2%	52.3%
None	—		0.55	28.0	3.32e-01	89.1%	70.4%
1312442	12.1.1.43 ↗	beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_38	0.52	27.0	3.35e-01	88.1%	79.3%
5010581	310.3.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related	0.52	28.0	3.61e-01	93.3%	88.7%

D5 medium residues 833-916

PDB

Domain cluster: rep: LEF-8__YP_009330246__Plodia_interpunctella_granulovirus__262175__D555-571_748-799

D6 medium residues 917-980

PDB