←Back to structures
lipopolysaccharide-_modifying_enzyme
Euk-VirHeliothis_virescens_ascovirus_3f
lipopolysaccharide-_modifying_enzyme__YP_009701601__Heliothis_virescens_ascovirus_3f__328614
Identity
- Accession:
- YP_009701601 ↗
- Protein ID:
- lipopolysaccharide-_modifying_enzyme
- Kingdom:
- euk
Quality
59.2
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Ascoviridae›
Ascovirus›
Heliothis_virescens_ascovirus_3f
TaxID: 328614
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 319-509
Domain cluster:
rep: IMGVR_UViG_3300025840_006347-3300025840-Ga0208917_10015349__D93-249
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05686.19 best | Glyco_transf_90 | 94.4 | 9.90e-27 | 100.0% | 41.9% |
D2
high
residues 578-685
D3
high
residues 691-851
Domain cluster:
rep: Ser_Thr_protein_kinase__YP_009325839__Only_Syngen_Nebraska_virus_5__1917232__D131-313
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qtcA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.68 | 62.0 | 5.84e-01 | 96.3% | 99.0% |
| 2b1eA04 | 1.20.1280.170 | Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 | 0.61 | 37.0 | 4.16e-01 | 93.2% | 77.2% |
| 2pziA01 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 47.0 | 4.55e-01 | 96.3% | 85.7% |
| 2ppqA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 44.0 | 3.97e-01 | 98.1% | 69.2% |
| 3hrzB01 | 2.20.130.20 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › | 0.50 | 19.0 | 2.68e-01 | 90.7% | 68.4% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3231695 | 206.1.1.28 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase | 0.76 | 63.0 | 5.02e-01 | 96.3% | 47.6% |
| 3230153 | 206.1.1.28 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase | 0.74 | 63.0 | 5.32e-01 | 97.5% | 56.5% |
| 3247035 | 206.1.1.28 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase | 0.71 | 57.0 | 4.46e-01 | 82.6% | 52.5% |
| 3791557 | 206.1.1.28 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase | 0.68 | 64.0 | 4.81e-01 | 100.0% | 53.0% |
| 3614882 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.60 | 55.0 | 4.40e-01 | 96.9% | 64.7% |
| 5002575 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.58 | 33.0 | 2.94e-01 | 82.6% | 40.0% |
| 3269269 | 109.4.1.31 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3 | 0.56 | 29.0 | 2.59e-01 | 96.9% | 33.2% |
| 3307184 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.54 | 49.0 | 3.42e-01 | 98.8% | 39.4% |
D4
high
residues 864-969
D5
medium
residues 36-102_217-318