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lon_protease-like_protein

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

lon_protease-like_protein__YP_003986748__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003986748 ↗
Protein ID:
lon_protease-like_protein
Kingdom:
euk

Quality

60.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 814-1023
PDB
Domain cluster: rep: CAKLQF020000026.1__CAH1092387.1__SAMEA5780031_03519__00001__D3-168
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05362.20 best Lon_C 137.9 4.90e-40 90.5% 84.4%
D2 medium residues 120-177
PDB
D3 medium residues 229-287
PDB
D4 medium residues 397-445
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mmjo00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.79 55.0 4.74e-01 73.5% 48.0%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 46.0 3.74e-01 73.5% 36.5%
4fqnC00 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.66 55.0 4.70e-01 98.0% 65.9%
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 50.0 3.78e-01 95.9% 82.5%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 49.0 3.37e-01 91.8% 28.0%
7ml0M01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 50.0 4.28e-01 93.9% 69.5%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.59 49.0 4.22e-01 100.0% 62.1%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.59 46.0 4.40e-01 87.8% 91.5%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.57 47.0 4.03e-01 91.8% 71.6%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.56 48.0 3.40e-01 95.9% 49.3%
3t6pA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 45.0 4.15e-01 91.8% 71.2%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.53 35.0 3.42e-01 71.4% 72.1%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3999039 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.77 63.0 4.70e-01 87.8% 58.3%
3970512 5086.1.1.189 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CzcB 0.72 49.0 4.26e-01 71.4% 49.3%
3213449 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.70 57.0 5.15e-01 93.9% 75.7%
5060248 4044.1.1.0 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.64 50.0 4.61e-01 95.9% 80.0%
5070580 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.62 52.0 4.93e-01 95.9% 91.5%
3356842 5086.1.1.139 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DOG1 0.61 51.0 3.59e-01 100.0% 42.2%
3996657 4979.2.1.1 ↗ alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD 0.60 47.0 4.72e-01 89.8% 86.0%
3521664 103.1.1.24 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › BIRC2-3-like_UBA 0.59 47.0 4.68e-01 87.8% 88.0%
3399531 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.58 47.0 3.86e-01 98.0% 63.0%
3840526 103.1.1.24 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › BIRC2-3-like_UBA 0.58 47.0 4.09e-01 89.8% 61.3%
3465113 2006.1.1.38 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_RAM2_N 0.58 48.0 3.59e-01 100.0% 40.7%
3839240 4198.1.1.1 ↗ alpha arrays › TerB-like › TerB-like › TerB-like › TerB 0.56 46.0 3.48e-01 98.0% 65.4%
4610458 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.54 44.0 4.43e-01 93.9% 94.0%
D5 medium residues 449-508
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.74 51.0 4.44e-01 71.7% 50.5%
6m36O01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.73 58.0 4.97e-01 86.7% 74.0%
7ocsB01 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.67 54.0 3.95e-01 90.0% 34.1%
5ekcF01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.66 56.0 3.64e-01 100.0% 67.9%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.63 46.0 4.71e-01 83.3% 86.0%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.61 45.0 4.39e-01 85.0% 70.6%
2b8iA00 1.20.1280.100 Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain 0.60 47.0 4.40e-01 86.7% 68.8%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.60 46.0 4.32e-01 86.7% 67.6%
3c24A02 1.10.3640.10 Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal 0.60 44.0 3.82e-01 81.7% 53.0%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 47.0 3.49e-01 85.0% 73.0%
5kf6A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.59 48.0 3.30e-01 96.7% 24.7%
2mw2A00 1.20.1280.40 Mainly Alpha › Up-down Bundle › Monooxygenase › HHA 0.57 38.0 3.74e-01 70.0% 64.2%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.53 45.0 3.78e-01 96.7% 63.2%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.53 42.0 3.65e-01 93.3% 55.6%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 43.0 3.72e-01 100.0% 81.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3403783 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.80 65.0 4.97e-01 86.7% 44.5%
3552352 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.67 56.0 5.03e-01 95.0% 68.2%
4964216 5063.1.1.24 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PF26047 0.64 45.0 4.49e-01 76.7% 73.8%
184529 198.3.1.1 ↗ alpha arrays › Saposin-like › PAS factor › PAS factor › Pas_Saposin 0.60 47.0 4.40e-01 86.7% 68.8%
3477162 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.60 50.0 3.22e-01 95.0% 54.7%
3280093 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.60 48.0 3.53e-01 86.7% 63.2%
4081270 7581.1.1.3 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt,Ketoacyl-synt_C 0.58 50.0 2.84e-01 100.0% 46.3%
2674763 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.58 45.0 4.25e-01 86.7% 69.3%
5016327 605.1.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.57 45.0 4.28e-01 93.3% 74.3%
4957093 3456.1.1.1 ↗ extended segments › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › Oxidored_q4 0.56 42.0 3.41e-01 88.3% 40.3%
5018636 605.1.1.3 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_2 0.55 45.0 4.31e-01 91.7% 88.6%
5052910 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 3.82e-01 98.3% 76.4%
D6 medium residues 509-652
PDB
Domain cluster: rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00004.36 best AAA 60.4 3.70e-16 98.6% 93.9%
PF07728.21 AAA_5 35.5 1.30e-08 95.8% 97.1%