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mRNA-decapping_protein_D10
Euk-VirBeAn_58058_virus
mRNA-decapping_protein_D10__YP_009329720__BeAn_58058_virus__67082
Identity
- Accession:
- YP_009329720 ↗
- Protein ID:
- mRNA-decapping_protein_D10
- Kingdom:
- euk
Quality
90.5
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Oryzopoxvirus›
BeAn_58058_virus
TaxID: 67082
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-64_124-186
Domain cluster:
rep: decapping_enzyme__YP_005296292__Cotia_virus_SPAn232__930275__D21-62_124-184_200-215
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08476.16 best | VD10_N | 54.1 | 1.40e-14 | 31.4% | 83.7% |
D2
medium
residues 65-123
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1o0sA02 | 1.20.1370.30 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › | 0.66 | 48.0 | 4.03e-01 | 79.7% | 50.9% |
| 4yzwA01 | 1.20.1370.10 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Hemocyanin, N-terminal domain | 0.63 | 45.0 | 3.37e-01 | 76.3% | 37.6% |
| 3ejnA03 | 1.20.120.840 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain | 0.60 | 43.0 | 3.65e-01 | 81.4% | 97.3% |
| 2jqtA00 | 1.20.1280.40 | Mainly Alpha › Up-down Bundle › Monooxygenase › HHA | 0.57 | 40.0 | 4.09e-01 | 76.3% | 77.2% |
| 1sy7A02 | 1.20.1370.20 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain | 0.57 | 47.0 | 4.64e-01 | 93.2% | 90.6% |
| 2xl4A00 | 1.20.120.1420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › LntA helical domain | 0.55 | 46.0 | 3.52e-01 | 96.6% | 86.4% |
| 6z01B01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.55 | 37.0 | 3.47e-01 | 71.2% | 62.8% |
| 7t2rC01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.54 | 42.0 | 4.30e-01 | 86.4% | 98.2% |
| 3vurA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 43.0 | 3.65e-01 | 98.3% | 98.2% |
| 5k9xA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 38.0 | 2.60e-01 | 81.4% | 85.8% |
| 2qyaA01 | 3.30.1860.10 | Alpha Beta › 2-Layer Sandwich › uncharacterized conserved protein from methanopyrus kandleri fold like › uncharacterized conserved protein from methanopyrus kandleri domain like | 0.53 | 41.0 | 3.54e-01 | 91.5% | 93.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3816080 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.77 | 66.0 | 4.87e-01 | 93.2% | 55.9% |
| 3828776 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 54.0 | 3.96e-01 | 89.8% | 58.2% |
| 2897635 | 3317.3.1.0 ↗ | alpha arrays › KorB C-terminal domain-like › Helical domain of Rubisco accumulation factor 1 › Helical domain of Rubisco accumulation factor 1 | 0.66 | 46.0 | 3.76e-01 | 74.6% | 51.3% |
| 3335165 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 48.0 | 3.85e-01 | 86.4% | 50.8% |
| 3819985 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.61 | 49.0 | 3.72e-01 | 93.2% | 64.5% |
| 3811905 | 109.2.1.7 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Terpene_synth | 0.61 | 49.0 | 3.51e-01 | 93.2% | 76.8% |
| 3460319 | 109.59.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain | 0.61 | 47.0 | 4.39e-01 | 91.5% | 77.5% |
| 4856249 | 151.1.1.1 ↗ | alpha bundles › Hemocyanin-N › Hemocyanin-N › Hemocyanin-N › Hemocyanin_N | 0.60 | 46.0 | 4.42e-01 | 84.7% | 84.3% |
| 3662700 | 109.2.1.7 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Terpene_synth | 0.60 | 49.0 | 3.65e-01 | 93.2% | 90.0% |
| 3267703 | 4048.1.1.1 ↗ | alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel | 0.56 | 47.0 | 4.13e-01 | 98.3% | 73.7% |
| 3631439 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.56 | 36.0 | 3.11e-01 | 72.9% | 40.0% |
| 3783806 | 592.1.1.2 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Helicase_PWI | 0.56 | 39.0 | 3.27e-01 | 76.3% | 41.0% |
| 3342850 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.54 | 35.0 | 3.26e-01 | 72.9% | 52.0% |
| 4027348 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.53 | 34.0 | 3.24e-01 | 72.9% | 52.0% |