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mRNA_capping_enzyme
Euk-VirChrysochromulina_ericina_virus
mRNA_capping_enzyme__YP_009173557__Chrysochromulina_ericina_virus__455364
Identity
- Accession:
- YP_009173557 ↗
- Protein ID:
- mRNA_capping_enzyme
- Kingdom:
- euk
Quality
60.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Chrysochromulina_ericina_virus
TaxID: 455364
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 706-882_951-1035
Domain cluster:
rep: hypothetical_protein_BNJ_00161__YP_009352573__Kaumoebavirus_Viruses.__X__D611-840
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03291.23 best | mRNA_G-N7_MeTrfase | 51.3 | 1.40e-13 | 83.2% | 50.2% |
D2
medium
residues 31-109_126-139
D3
medium
residues 501-513_536-673
D4
medium
residues 883-950
Domain cluster:
rep: NP868R__YP_009703157__African_swine_fever_virus__10497__D746-809
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t3qC03 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.62 | 47.0 | 4.01e-01 | 82.4% | 64.0% |
| 4c0dC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.59 | 39.0 | 3.11e-01 | 79.4% | 33.1% |
| 1x0tA02 | 6.20.50.20 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.59 | 31.0 | 3.62e-01 | 73.5% | 73.3% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.59 | 51.0 | 3.99e-01 | 98.5% | 75.2% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 40.0 | 4.12e-01 | 100.0% | 76.2% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.58 | 39.0 | 3.63e-01 | 86.8% | 53.3% |
| 1g31A00 | 2.30.33.40 | Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin | 0.57 | 39.0 | 3.38e-01 | 72.1% | 65.4% |
| 2gq1A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.56 | 42.0 | 3.26e-01 | 83.8% | 50.6% |
| 4c0dB00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.56 | 39.0 | 2.87e-01 | 73.5% | 37.2% |
| 4c0fC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.55 | 40.0 | 3.34e-01 | 83.8% | 45.5% |
| 1i2dA02 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.55 | 44.0 | 3.20e-01 | 86.8% | 67.0% |
| 2obdA02 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.53 | 40.0 | 3.00e-01 | 83.8% | 60.3% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 42.0 | 3.38e-01 | 89.7% | 57.6% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 43.0 | 3.43e-01 | 95.6% | 53.3% |
| 2fpnA02 | 3.30.360.40 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › YwmB-like | 0.52 | 37.0 | 3.78e-01 | 80.9% | 78.5% |
| 2qe8A00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.51 | 41.0 | 2.73e-01 | 95.6% | 38.0% |
| 3zxkA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 42.0 | 3.02e-01 | 95.6% | 31.5% |
| 3ci0J01 | 3.10.610.10 | Alpha Beta › Roll › Pili subunits › GSPII I/J protein-like | 0.50 | 42.0 | 3.78e-01 | 100.0% | 91.3% |
| 4hwmA00 | 2.40.128.500 | Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein | 0.50 | 41.0 | 3.44e-01 | 92.6% | 52.1% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2702891 | 2003.1.5.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase | 0.86 | 78.0 | 5.02e-01 | 100.0% | 24.7% |
| 4527287 | 2003.1.5.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase | 0.70 | 63.0 | 3.91e-01 | 100.0% | 17.8% |
| 3586955 | 220.1.1.88 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF956 | 0.62 | 34.0 | 3.01e-01 | 70.6% | 34.0% |
| 5063642 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.59 | 48.0 | 4.24e-01 | 89.7% | 78.0% |
| 3407209 | 4.1.1.41 ↗ | beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C | 0.57 | 40.0 | 2.99e-01 | 73.5% | 41.1% |
| 5078664 | 4018.1.1.0 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases | 0.57 | 43.0 | 3.52e-01 | 83.8% | 71.9% |
| 4121107 | 5.1.4.24 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBP56 | 0.56 | 44.0 | 2.79e-01 | 91.2% | 48.2% |
| 3273270 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 40.0 | 2.82e-01 | 86.8% | 21.2% |
| 4100965 | 5.1.4.291 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_1, Glyoxal_oxid_N | 0.55 | 39.0 | 2.45e-01 | 80.9% | 13.1% |
| 3767166 | 79.1.1.31 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › ITI_HC_C | 0.55 | 47.0 | 4.23e-01 | 95.6% | 81.1% |
| 3804237 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.55 | 41.0 | 2.67e-01 | 82.4% | 16.2% |
| 4014212 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.55 | 47.0 | 3.48e-01 | 100.0% | 98.4% |
| 3805095 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.54 | 44.0 | 4.03e-01 | 89.7% | 77.8% |
| 5048970 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.54 | 41.0 | 4.08e-01 | 82.4% | 91.4% |
| 3474747 | 5.1.5.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N | 0.54 | 41.0 | 2.53e-01 | 85.3% | 31.3% |
| 3921621 | 2003.1.5.359 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth, Methyltransf_25 | 0.53 | 43.0 | 2.49e-01 | 88.2% | 18.3% |
| 3837783 | 3291.1.1.50 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › FmiP_Thoc5 | 0.53 | 40.0 | 3.48e-01 | 82.4% | 57.3% |
| 4599589 | 5.1.2.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 | 0.53 | 40.0 | 2.62e-01 | 85.3% | 55.8% |
| 3374035 | 5.1.5.86 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Kelch_1 | 0.53 | 39.0 | 2.48e-01 | 79.4% | 39.4% |
| 3367557 | 4099.1.1.41 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › FmiP_Thoc5 | 0.53 | 39.0 | 3.24e-01 | 82.4% | 46.7% |
| 3826545 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.52 | 42.0 | 3.67e-01 | 89.7% | 74.3% |
| 863938 | 328.5.1.3 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › Tsi1 | 0.52 | 43.0 | 3.43e-01 | 95.6% | 53.3% |
| 3365706 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 37.0 | 2.56e-01 | 80.9% | 21.7% |
| 4851967 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.51 | 35.0 | 3.61e-01 | 86.8% | 77.4% |
| 4973990 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.51 | 37.0 | 2.45e-01 | 80.9% | 16.8% |
| 3242790 | 206.1.3.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N | 0.51 | 40.0 | 2.64e-01 | 85.3% | 37.6% |
| 4012314 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.51 | 45.0 | 2.95e-01 | 100.0% | 39.3% |
| 3557649 | 4.8.1.20 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N | 0.51 | 38.0 | 3.29e-01 | 91.2% | 51.4% |
| 3211848 | 5.1.4.453 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_KLHDC2_KLHL20_DRC7 | 0.51 | 40.0 | 2.58e-01 | 91.2% | 49.1% |
| 4294441 | 206.1.3.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N | 0.51 | 41.0 | 2.70e-01 | 97.1% | 92.7% |
| 5054891 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.51 | 43.0 | 3.24e-01 | 100.0% | 69.2% |
| 3832622 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.51 | 39.0 | 2.63e-01 | 89.7% | 48.6% |
| 3937478 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.50 | 44.0 | 3.81e-01 | 100.0% | 73.6% |
| 3492343 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.50 | 40.0 | 3.34e-01 | 89.7% | 76.0% |