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mRNA_capping_enzyme_small_subunit
Euk-VirMurmansk_poxvirus
mRNA_capping_enzyme_small_subunit__YP_009408295__Murmansk_poxvirus__2025359
Identity
- Accession:
- YP_009408295 ↗
- Protein ID:
- mRNA_capping_enzyme_small_subunit
- Kingdom:
- euk
Quality
75.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Centapoxvirus›
Murmansk_poxvirus
TaxID: 2025359
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-11_31-70_244-287
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03341.21 best | Pox_mRNA-cap | 63.9 | 2.50e-17 | 50.5% | 15.5% |
| PF03341.21 | Pox_mRNA-cap | 64.8 | 1.40e-17 | 49.5% | 15.1% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5c9eB01 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.59 | 26.0 | 2.76e-01 | 92.6% | 42.5% |
| 2wcoA01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.58 | 35.0 | 2.33e-01 | 100.0% | 15.4% |
| 2p6rA03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.58 | 38.0 | 2.91e-01 | 100.0% | 29.4% |
| 2au5A00 | 1.20.120.590 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like | 0.54 | 38.0 | 3.45e-01 | 100.0% | 53.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4855947 | 2003.1.5.29 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Pox_mRNA-cap | 0.86 | 80.0 | 5.52e-01 | 100.0% | 99.7% |
| 3716789 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.62 | 47.0 | 4.03e-01 | 81.1% | 93.5% |
| 5064257 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.59 | 46.0 | 3.62e-01 | 84.2% | 87.8% |
| 3975121 | 604.2.1.1 ↗ | alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C | 0.58 | 41.0 | 3.89e-01 | 74.7% | 87.0% |
| 4953775 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.55 | 38.0 | 3.42e-01 | 71.6% | 89.2% |
D2
medium
residues 12-30_71-109_121-243
Domain cluster:
rep: capping_enzyme_small_subunit__YP_005296294__Cotia_virus_SPAn232__930275__D1-46_68-108_120-235
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03341.21 best | Pox_mRNA-cap | 254.0 | 3.00e-75 | 90.1% | 60.9% |